/home/tvinar/exonhunter/bin/priors -y 1000 /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_3664.seq /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_3664.fasta /home/tvinar/exonhunter/bin/../param/plasmodium/one.gc >/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/prior.adv
/home/tvinar/exonhunter/bin/writegccont /home/tvinar/exonhunter/bin/../param/plasmodium/one.gc >/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/gccont.adv
'/home/tvinar/exonhunter/temp/plasmodium/ehtemp_plasmodium-split-fa/' 'repeat' advisor: repeat-i repeat i 3 .9 0 1

/home/tvinar/exonhunter/bin/bucket_intervals -y 1000 /home/tvinar/exonhunter/data/plasmodium/plasmodium-r.split.seq /home/tvinar/exonhunter/temp/plasmodium/ehtemp_plasmodium-split-fa//repeat.int i 3 .9 0 1 >/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/repeat-i.adv 2>/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/repeat-i.err
/home/tvinar/exonhunter/bin/show_buckets.pl /home/tvinar/exonhunter/bin/../param/plasmodium/advisors/repeat-i.adv | jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/repeat-i.adv.eps
'/home/tvinar/exonhunter/temp/plasmodium/ehtemp_plasmodium-split-fa/' 'same-est' advisor: same-est-ex same-est ex 5 .4

/home/tvinar/exonhunter/bin/bucket_intervals -y 1000 /home/tvinar/exonhunter/data/plasmodium/plasmodium-r.split.seq /home/tvinar/exonhunter/temp/plasmodium/ehtemp_plasmodium-split-fa//same-est.int ex 5 .4  >/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/same-est-ex.adv 2>/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/same-est-ex.err
/home/tvinar/exonhunter/bin/show_buckets.pl /home/tvinar/exonhunter/bin/../param/plasmodium/advisors/same-est-ex.adv | jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/same-est-ex.adv.eps
'/home/tvinar/exonhunter/temp/plasmodium/ehtemp_plasmodium-split-fa/' 'same-est' advisor: same-est-ix same-est ix 5 .4

/home/tvinar/exonhunter/bin/bucket_intervals -y 1000 /home/tvinar/exonhunter/data/plasmodium/plasmodium-r.split.seq /home/tvinar/exonhunter/temp/plasmodium/ehtemp_plasmodium-split-fa//same-est.int ix 5 .4  >/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/same-est-ix.adv 2>/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/same-est-ix.err
/home/tvinar/exonhunter/bin/show_buckets.pl /home/tvinar/exonhunter/bin/../param/plasmodium/advisors/same-est-ix.adv | jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/same-est-ix.adv.eps
'/home/tvinar/exonhunter/temp/plasmodium/ehtemp_plasmodium-split-fa/' 'other-est' advisor: other-est-ex other-est ex 2 .4

/home/tvinar/exonhunter/bin/bucket_intervals -y 1000 /home/tvinar/exonhunter/data/plasmodium/plasmodium-r.split.seq /home/tvinar/exonhunter/temp/plasmodium/ehtemp_plasmodium-split-fa//other-est.int ex 2 .4  >/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/other-est-ex.adv 2>/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/other-est-ex.err
/home/tvinar/exonhunter/bin/show_buckets.pl /home/tvinar/exonhunter/bin/../param/plasmodium/advisors/other-est-ex.adv | jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/other-est-ex.adv.eps
'/home/tvinar/exonhunter/temp/plasmodium/ehtemp_plasmodium-split-fa/' 'other-est' advisor: other-est-ix other-est ix 2 .4

/home/tvinar/exonhunter/bin/bucket_intervals -y 1000 /home/tvinar/exonhunter/data/plasmodium/plasmodium-r.split.seq /home/tvinar/exonhunter/temp/plasmodium/ehtemp_plasmodium-split-fa//other-est.int ix 2 .4  >/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/other-est-ix.adv 2>/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/other-est-ix.err
/home/tvinar/exonhunter/bin/show_buckets.pl /home/tvinar/exonhunter/bin/../param/plasmodium/advisors/other-est-ix.adv | jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/other-est-ix.adv.eps
'/home/tvinar/exonhunter/temp/plasmodium/ehtemp_plasmodium-split-fa/' 'other-prot' advisor: other-prot-e other-prot e 5 .4

/home/tvinar/exonhunter/bin/bucket_intervals -y 1000 /home/tvinar/exonhunter/data/plasmodium/plasmodium-r.split.seq /home/tvinar/exonhunter/temp/plasmodium/ehtemp_plasmodium-split-fa//other-prot.int e 5 .4  >/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/other-prot-e.adv 2>/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/other-prot-e.err
/home/tvinar/exonhunter/bin/show_buckets.pl /home/tvinar/exonhunter/bin/../param/plasmodium/advisors/other-prot-e.adv | jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/other-prot-e.adv.eps
'/home/tvinar/exonhunter/temp/plasmodium/ehtemp_plasmodium-split-fa/' 'other-prot' advisor: other-prot-i other-prot i 5 .4 

/home/tvinar/exonhunter/bin/bucket_intervals -y 1000 /home/tvinar/exonhunter/data/plasmodium/plasmodium-r.split.seq /home/tvinar/exonhunter/temp/plasmodium/ehtemp_plasmodium-split-fa//other-prot.int i 5 .4  >/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/other-prot-i.adv 2>/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/other-prot-i.err
/home/tvinar/exonhunter/bin/show_buckets.pl /home/tvinar/exonhunter/bin/../param/plasmodium/advisors/other-prot-i.adv | jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/other-prot-i.adv.eps
'/home/tvinar/exonhunter/temp/plasmodium/ehtemp_plasmodium-split-fa/' 'other-prot' advisor: other-prot-start other-prot start 2 0 

/home/tvinar/exonhunter/bin/bucket_intervals -y 1000 /home/tvinar/exonhunter/data/plasmodium/plasmodium-r.split.seq /home/tvinar/exonhunter/temp/plasmodium/ehtemp_plasmodium-split-fa//other-prot.int start 2 0  >/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/other-prot-start.adv 2>/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/other-prot-start.err
/home/tvinar/exonhunter/bin/show_buckets.pl /home/tvinar/exonhunter/bin/../param/plasmodium/advisors/other-prot-start.adv | jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/other-prot-start.adv.eps
'/home/tvinar/exonhunter/temp/plasmodium/ehtemp_plasmodium-split-fa/' 'other-prot' advisor: other-prot-stop other-prot stop 2 0 

/home/tvinar/exonhunter/bin/bucket_intervals -y 1000 /home/tvinar/exonhunter/data/plasmodium/plasmodium-r.split.seq /home/tvinar/exonhunter/temp/plasmodium/ehtemp_plasmodium-split-fa//other-prot.int stop 2 0  >/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/other-prot-stop.adv 2>/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/other-prot-stop.err
/home/tvinar/exonhunter/bin/show_buckets.pl /home/tvinar/exonhunter/bin/../param/plasmodium/advisors/other-prot-stop.adv | jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/advisors/other-prot-stop.adv.eps
DONE Mon Feb  5 14:43:43 2007
