1-BIN-301, 2-AIN-501 Methods in Bioinformatics

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Journal club papers: Rozdiel medzi revíziami

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Podľa vašich preferencií sme Vás zadelili ku článkom (v prípade, že o vaše vybrané články bol velký záujem, snažili sme sa dať prednosť študentom, ktorí svoje preferencie odvzdali skôr).
 
  
1. {{cite journal| author=Do CB, Mahabhashyam MS, Brudno M, Batzoglou S| title=ProbCons: Probabilistic consistency-based multiple sequence alignment. | journal=Genome Res | year= 2005 | volume= 15 | issue= 2 | pages= 330-40 | pmid=15687296 }}
 
 
2. {{cite journal| author=Lunter G| title=Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes. | journal=Bioinformatics | year= 2007 | volume= 23 | issue= 13 | pages= i289-96 | pmid=17646308 | doi=10.1093/bioinformatics/btm185 }}
 
 
3. {{cite journal| author=Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D| title=Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes. | journal=Proc Natl Acad Sci U S A | year= 2003 | volume= 100 | issue= 20 | pages= 11484-9 | pmid=14500911 | doi=10.1073/pnas.1932072100 }}
 
::: '''Čítajú''' Michal Burger, Peter Galiovský, Peter Jurčo, Marcel Kucharík, Bianka Mateášiková
 
 
4. {{cite journal| author=Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, Rosenbloom K et al.| title=Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes | journal=Genome Res | year= 2005 | volume= 15 | issue= 8 | pages= 1034-50 | pmid=16024819 | doi=10.1101/gr.3715005}}
 
::: '''Čítajú''' Tomáš Eichler, Martin Gallus, Martin Sárközi, Martina Višňovská, Matej Vitko
 
5. {{cite journal| author=Wapinski I, Pfeffer A, Friedman N, Regev A| title=Natural history and evolutionary principles of gene duplication in fungi | journal=Nature | year= 2007 | volume= 449 | issue= 7158 | pages= 54-61 | pmid=17805289 | doi=10.1038/nature06107 | url=http://www.eecs.ucf.edu/~shzhang/CAP6938/p7_nature06107_aviv_duplication.pdf}}
 
::: '''Čítajú''' Barbora Candráková, Jakub Kováč, Michal Kožuch, Ján Kriška, Milan Uherčík
 
 
6. {{cite journal| author=Clamp M, Fry B, Kamal M, Xie X, Cuff J, Lin MF et al.| title=Distinguishing protein-coding and noncoding genes in the human genome. | journal=Proc Natl Acad Sci U S A | year= 2007 | volume= 104 | issue= 49 | pages= 19428-33 | pmid=18040051 | doi=10.1073/pnas.0709013104}}
 
::: '''Čítajú''' Michal Antonič, Matej Darebník, Juraj Mešťánek, Pavol Panák, Tomáš Paulenda
 
 
7. {{cite journal| author=Eisen MB, Spellman PT, Brown PO, Botstein D| title=Cluster analysis and display of genome-wide expression
 
patterns. | journal=Proc Natl Acad Sci U S A | year= 1998 | volume= 95 | issue= 25 | pages= 14863-8 | pmid=9843981 }}
 
 
8. {{cite journal| author=Harbison CT, Gordon DB, Lee TI, Rinaldi NJ, Macisaac KD, Danford TW et al.| title=Transcriptional regulatory code of a eukaryotic genome. | journal=Nature | year= 2004 | volume= 431 | issue= 7004 | pages= 99-104 | pmid=15343339  | doi=10.1038/nature02800 | url=http://www.psrg.csail.mit.edu/pubs/nature-2004.pdf }}
 
::: '''Čítajú''' Ladislav Benc, Maroš Gálik, Jana Konkoľová, Martin Kravec, Michaela Libiaková
 
 
9. {{cite journal| author=Bystroff C, Baker D| title=Prediction of local structure in proteins using a library of sequence-structure motifs. | journal=J Mol Biol | year= 1998 | volume= 281 | issue= 3 | pages= 565-77 | pmid=9698570 | doi=10.1006/jmbi.1998.1943 | url=http://depts.washington.edu/bakerpg/papers/Bystroff-JMB-v281-p565.pdf}}
 
::: '''Čítajú''' Matúš Fedák, Jana Hlavačiková, Adam Ješko, Lenka Kyjacová, Michal Nánási
 
 
10. {{cite journal| author=Sharan R, Suthram S, Kelley RM, Kuhn T, McCuine S, Uetz P et al.| title=Conserved patterns of protein interaction in multiple species. | journal=Proc Natl Acad Sci U S A | year= 2005 | volume= 102 | issue= 6 | pages= 1974-9 | pmid=15687504 | doi=10.1073/pnas.0409522102 }}
 
::: '''Čítajú''' Stanislav Hreha, Martin Králik, Martin Macko, Miroslav Nadhajský, Martina Petrušová
 
 
11. {{cite journal| author=Andronescu M, Fejes AP, Hutter F, Hoos HH, Condon A| title=A new algorithm for RNA secondary structure design. | journal=J Mol Biol | year= 2004 | volume= 336 | issue= 3 | pages= 607-24 | pmid=15095976 | doi=10.1016/j.jmb.2003.12.041 | url=http://people.cs.ubc.ca/~hutter/papers/jmb04-rna-ssd.pdf }}
 
::: '''Čítajú''' Peter Herman, Jakub Kollár, Peter Kováč, Peter Perešíni, Ladislav Rampášek, Jozef Vavro
 
 
12. {{cite journal| author=Hernandez RD, Hubisz MJ, Wheeler DA, Smith DG, Ferguson B, Rogers J et al.| title=Demographic histories and patterns of linkage disequilibrium in Chinese and Indian rhesus macaques. | journal=Science | year= 2007 | volume= 316 | issue= 5822 | pages= 240-3 | pmid=17431170 | url=http://www.sciencemag.org/cgi/content/full/316/5822/240 |  doi=10.1126/science.1140462 }}
 

Verzia zo dňa a času 20:57, 3. október 2010