1-BIN-301, 2-AIN-501 Methods in Bioinformatics

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==Courses==
 
==Courses==
 
* Course 1-BIN-301 is for computer-science related programs, namely BIN, INF, mINF, mAIN, DAV (shortly denoted computer science)
 
* Course 1-BIN-301 is for computer-science related programs, namely BIN, INF, mINF, mAIN, DAV (shortly denoted computer science)
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* Each student will select from the provided list the three articles that are of highest interest to him/her.
 
* Each student will select from the provided list the three articles that are of highest interest to him/her.
 
* According to these preferences, instructors will divide the students into groups. Each group will read a different article.
 
* According to these preferences, instructors will divide the students into groups. Each group will read a different article.
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* We will create a group for each paper in Moodle which can be used for any discussions.
 
* Each student first reads the assigned article individually.
 
* Each student first reads the assigned article individually.
 
* Then the whole group meets, discusses the article and tries to clarify any questions or to find missing information in the literature.
 
* Then the whole group meets, discusses the article and tries to clarify any questions or to find missing information in the literature.
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Details for the journal club group meeting
 
Details for the journal club group meeting
 
* Remember that everyone should read the article before the first meeting
 
* Remember that everyone should read the article before the first meeting
* The first meeting should take place no later than November 23. The meeting can be online or in person. Online meetings should be on MS Teams, in person meetings should be at FMFI or PriFUK. Try to choose a time suitable for all members of the group. We will create a channel for each group on MS Teams which can be used for any discussions and for the meeting itself.
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* The first meeting should take place no later than November 22. The meeting can be online (e,g, in MS Teams) or in person. Try to choose a time suitable for all members of the group.  
* Post the chosen time and place of the first meeting on MS Teams General channel no later than 1 day before the meeting.
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* At least 24 hours before the first group meeting, post its date, time and location to the Journal club discussion forum in Moodle
* After the first meeting, one representative of the group will post a short summary to the group channel on MS Teams stating who attended the meeting, who apologized and who did not respond to the group and what was the outcome of the meeting - whether the group had problems with some parts of the article, whether it plans to meet again, whether they need a consultation with the instructors, etc. You do not need to report subsequent meetings, unless you need help.  
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* After the first meeting, one representative of the group will post a short summary to the Journal club discussion forum in Moodle stating who attended the meeting, who apologized and who did not respond to the group and what was the outcome of the meeting - whether the group had problems with some parts of the article, whether it plans to meet again, whether they need a consultation with the instructors, etc. You do not need to report subsequent meetings, unless you need help.  
 
* Failure to hold the first meeting according to these rules may affect the grade of the final report.
 
* Failure to hold the first meeting according to these rules may affect the grade of the final report.
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Advice and instructions for the written report from the journal club
 
Advice and instructions for the written report from the journal club
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==Exam==
 
==Exam==
  
The exam is primarily in a written form and takes 2-3 hours. The content will be specified later. You can bring a cheat sheet - 2 pages of A4 paper with arbitrary content (handwritten or printed). If the exam will take place online, it will be followed by an oral exam to verify that you understand the course material tested in the written exam.
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The exam is primarily in a written form and takes 2-3 hours. The content will be specified later. You can bring a cheat sheet - 2 pages of A4 paper with arbitrary content (handwritten or printed).  
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If you do not pass the exam during the first, regular date, the second and third attempt may involve an oral part in addition to written part.
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If circumstances force us to do the exam online, it will be also followed by an oral exam to verify that you understand the course material tested in the written exam.
  
 
==Project==
 
==Project==
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* We recommend starting working on the project during the semester and consult any questions during tutorials for biologists.
 
* We recommend starting working on the project during the semester and consult any questions during tutorials for biologists.
 
* The final report will be due during the exam period, followed by a short personal meeting with discussion of the project.
 
* The final report will be due during the exam period, followed by a short personal meeting with discussion of the project.
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* Further details on [[Project|separate page]].
  
 
==Academic integrity==
 
==Academic integrity==
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Cheating and plagiarism on homeworks and exams is a serious violation of academic integrity.  
 
Cheating and plagiarism on homeworks and exams is a serious violation of academic integrity.  
  
On homeworks, you are '''not allowed''' to copy other person's work (eg from a classmate, from the Internet, or from scientific literature) and submit it as your own. You are also not allowed to let another person to copy your solution. We allow and encourage discussion among students about individual homework tasks. However, the solutions you submit must be your own work written in your own words. To avoid unnecessary problems, do not take notes during group discussions about homework and wait at least three hours after such a discussion before writing the solution to be submitted.
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On homeworks, you are '''not allowed''' to copy other person's work (eg from a classmate, from the Internet including AI chatbots, or from scientific literature) and submit it as your own. You are also not allowed to let another person to copy your solution. We allow and encourage discussion among students about individual homework tasks. However, the solutions you submit must be your own work written in your own words. To avoid unnecessary problems, do not take notes during group discussions about homework and wait at least three hours after such a discussion before writing the solution to be submitted.
  
 
During exams, do not use unauthorized aids and do not communicate with persons other than the instructors.
 
During exams, do not use unauthorized aids and do not communicate with persons other than the instructors.
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When cheating or plagiarism is detected, we will normally assign a grade of 0 for the relevant part of the work, with a minimum reduction of the final grade by one letter. Cheating on the exam will result in the FX grade for the exam. Particularly serious violations of academic integrity will be referred to the dean of the faculty.
 
When cheating or plagiarism is detected, we will normally assign a grade of 0 for the relevant part of the work, with a minimum reduction of the final grade by one letter. Cheating on the exam will result in the FX grade for the exam. Particularly serious violations of academic integrity will be referred to the dean of the faculty.
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Aktuálna revízia z 14:51, 25. september 2024