1-BIN-301, 2-AIN-501 Methods in Bioinformatics

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| style="background:#f0f0f0" | '''When published'''
 
| style="background:#f0f0f0" | '''When published'''
 
| style="background:#f0f0f0" | '''Deadline for submitting'''  
 
| style="background:#f0f0f0" | '''Deadline for submitting'''  
| style="background:#f0f0f0" | '''Questions'''
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{{DU | Quizes (Slovak only) | Each Thursday 19:00  | Next Wednesday 22:00 }}
{{DU | Quizes (Slovak only) | Each Thursday 19:00  | Next Wednesday 22:00 | }}
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{{DUviac}} [https://moodle.uniba.sk/course/view.php?id=2160 Quizzes in Moodle]
 
{{DUviac}} [https://moodle.uniba.sk/course/view.php?id=2160 Quizzes in Moodle]
 
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{{DU | Homework 1 | Oct. 13, 2022 | Nov. 8, 2022 22:00| inf: {{pdf|a1i}}, bio: {{pdf|a1b}} }}
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{{DU | Homework 1 | Oct. 20, 2023 | Nov. 8, 2023 22:00}}
{{DUviac}} Sequencing, alignment<br>Files for biologists: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/du1/du1-b.xls Excel table]<br>Moodle: [https://moodle.uniba.sk/mod/assign/view.php?id=40955 inf], [https://moodle.uniba.sk/mod/assign/view.php?id=40956 bio]
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{{DUviac}} Sequencing, alignment<br>Biologists: questions {{pdf|a1b}}, [https://compbio.fmph.uniba.sk/vyuka/mbi-data/du1/du1-b.xls Excel table], [https://moodle.uniba.sk/mod/assign/view.php?id=40956 Moodle]<br>Computer science: questions {{pdf|hw1}}, [https://compbio.fmph.uniba.sk/vyuka/mbi-data/du1/hw1-template.ipynb notebook template], [https://moodle.uniba.sk/mod/assign/view.php?id=40955 Moodle]
 
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{{DU | Homework 2 | Nov. 10, 2022 | Nov. 29, 2022 22:00 | inf: {{pdf|a2i}}, bio: {{pdf|a2b}} }}
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{{DU | Homework 2 | Nov. 9, 2023 | Nov. 29, 2023 22:00 }}
{{DUviac}} Evolution, comparative genomics <br>Files for computer scientists: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/a2-i.zip zip]<br>Moodle: [https://moodle.uniba.sk/mod/assign/view.php?id=40957 inf], [https://moodle.uniba.sk/mod/assign/view.php?id=40958 bio]
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{{DUviac}} Evolution, comparative genomics <br>Biologists: questions {{pdf|a2b}}, [https://moodle.uniba.sk/mod/assign/view.php?id=40958 Moodle]<br>Computer science: questions {{pdf|a2i-en}}, data [https://compbio.fmph.uniba.sk/vyuka/mbi-data/a2-i.zip zip], [https://moodle.uniba.sk/mod/assign/view.php?id=40957 Moodle]  
 
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{{DU | Homework 3 | Nov. 29, 2022 | Dec. 13, 2022 22:00 | {{pdf|a3-en}} }}
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{{DU | Homework 3 | Nov. 30, 2023 | Dec. 13, 2023 22:00 }}
{{DUviac}} Proteins, RNA<br>Sequence: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/a3.fasta fasta]<br>AlphaFold2 results: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/a3-orf1.png orf1], [http://compbio.fmph.uniba.sk/vyuka/mbi-data/a3-orf3.png orf3]<br>[https://moodle.uniba.sk/mod/assign/view.php?id=40959 Moodle]
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{{DUviac}} Proteins, RNA<br>Biologists: questions {{pdf|a3b-en}}, [https://moodle.uniba.sk/mod/assign/view.php?id=116962 Moodle]<br>Computer science: questions {{pdf|a3i-en}}, [https://moodle.uniba.sk/mod/assign/view.php?id=116961 Moodle]<br>Both: [https://compbio.fmph.uniba.sk/vyuka/mbi-data/a3.fasta sequence], AlphaFold2 results for [https://compbio.fmph.uniba.sk/vyuka/mbi-data/a3-orf1.png orf1], [https://compbio.fmph.uniba.sk/vyuka/mbi-data/a3-orf3.png orf3]
 
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{{DU | Journal club paper selection | Oct. 13, 2022 | Oct. 19, 2022 22:00 | [[Journal club papers|list of papers and form]] }}
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{{DU | Journal club paper selection | Oct. 12, 2023 | Oct. 18, 2023 22:00 | [[Journal club papers|list of papers and form]] }}
 
{{DUviac}} Please submit the form
 
{{DUviac}} Please submit the form
{{DU | Journal club report | | Dec. 16, 2022 22:00|  }}
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{{DU | Journal club report | | Dec. 15, 2023 22:00|  }}
 
{{DUviac}} Submit in [https://moodle.uniba.sk/mod/assign/view.php?id=40960 Moodle] (1x per group)
 
{{DUviac}} Submit in [https://moodle.uniba.sk/mod/assign/view.php?id=40960 Moodle] (1x per group)
 
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All assignments should be submitted to Moodle as a pdf before the specified deadline.
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All assignments should be submitted to Moodle as a pdf (or as directed in the assignment) before the specified deadline.
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Aktuálna revízia z 14:52, 25. september 2024