1-BIN-301, 2-AIN-501 Methods in Bioinformatics

Website moved to https://fmfi-compbio.github.io/mbi/


Tasks and dates: Rozdiel medzi revíziami

Z MBI
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Riadok 3: Riadok 3:
 
| style="background:#f0f0f0" | '''When published'''
 
| style="background:#f0f0f0" | '''When published'''
 
| style="background:#f0f0f0" | '''Deadline for submitting'''  
 
| style="background:#f0f0f0" | '''Deadline for submitting'''  
| style="background:#f0f0f0" | '''Questions'''
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{{DU | Quizes (Slovak only) | Each Thursday 19:00  | Next Wednesday 22:00 }}
{{DU | Quizes (Slovak only) | Each Thursday 19:00  | Next Wednesday 22:00 | }}
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{{DUviac}} [https://moodle.uniba.sk/course/view.php?id=2160 Quizzes in Moodle]
 
{{DUviac}} [https://moodle.uniba.sk/course/view.php?id=2160 Quizzes in Moodle]
 
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{{DU | Homework 1 | Oct. 20, 2023 | Nov. 8, 2023 22:00| comp.sci.: {{pdf|hw1}}, bio: {{pdf|a1b}}}}
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{{DU | Homework 1 | Oct. 20, 2023 | Nov. 8, 2023 22:00}}
{{DUviac}} Sequencing, alignment<br>Files for biologists: [https://compbio.fmph.uniba.sk/vyuka/mbi-data/du1/du1-b.xls Excel table]<br>Files for computer science: [https://compbio.fmph.uniba.sk/vyuka/mbi-data/du1/hw1-template.ipynb Notebook template]<br>Moodle: [https://moodle.uniba.sk/mod/assign/view.php?id=40955 comp.sci.], [https://moodle.uniba.sk/mod/assign/view.php?id=40956 bio]
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{{DUviac}} Sequencing, alignment<br>Biologists: questions {{pdf|a1b}}, [https://compbio.fmph.uniba.sk/vyuka/mbi-data/du1/du1-b.xls Excel table], [https://moodle.uniba.sk/mod/assign/view.php?id=40956 moodle]<br>Computer science: questions {{pdf|hw1}}, [https://compbio.fmph.uniba.sk/vyuka/mbi-data/du1/hw1-template.ipynb notebook template], [https://moodle.uniba.sk/mod/assign/view.php?id=40955 moodle]
 
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{{DU | Homework 2 | Nov. 16, 2023 | Nov. 29, 2023 22:00  }}
 
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{{DU | Homework 2 | Nov. 10, 2022 | Nov. 29, 2022 22:00 | inf: {{pdf|a2i}}, bio: {{pdf|a2b}} }}
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{{DUviac}} Evolution, comparative genomics <br>| inf: {{pdf|a2i}}, bio: {{pdf|a2b}}<br>Files for computer scientists: [https://compbio.fmph.uniba.sk/vyuka/mbi-data/a2-i.zip zip]<br>Moodle: [https://moodle.uniba.sk/mod/assign/view.php?id=40957 inf], [httpss://moodle.uniba.sk/mod/assign/view.php?id=40958 bio]
{{DUviac}} Evolution, comparative genomics <br>Files for computer scientists: [https://compbio.fmph.uniba.sk/vyuka/mbi-data/a2-i.zip zip]<br>Moodle: [https://moodle.uniba.sk/mod/assign/view.php?id=40957 inf], [httpss://moodle.uniba.sk/mod/assign/view.php?id=40958 bio]
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{{DU | Homework 3 | Nov. 29, 2022 | Dec. 13, 2022 22:00 | {{pdf|a3-en}} }}
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{{DU | Homework 3 | Nov. 29, 2023 | Dec. 13, 2023 22:00 }}
{{DUviac}} Proteins, RNA<br>Sequence: [https://compbio.fmph.uniba.sk/vyuka/mbi-data/a3.fasta fasta]<br>AlphaFold2 results: [https://compbio.fmph.uniba.sk/vyuka/mbi-data/a3-orf1.png orf1], [https://compbio.fmph.uniba.sk/vyuka/mbi-data/a3-orf3.png orf3]<br>[https://moodle.uniba.sk/mod/assign/view.php?id=40959 Moodle]
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<!--
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{{DUviac}} Proteins, RNA<br>{{pdf|a3-en}}<br>Sequence: [https://compbio.fmph.uniba.sk/vyuka/mbi-data/a3.fasta fasta]<br>AlphaFold2 results: [https://compbio.fmph.uniba.sk/vyuka/mbi-data/a3-orf1.png orf1], [https://compbio.fmph.uniba.sk/vyuka/mbi-data/a3-orf3.png orf3]<br>[https://moodle.uniba.sk/mod/assign/view.php?id=40959 Moodle]
 
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Riadok 23: Riadok 24:
 
{{DUviac}} Submit in [https://moodle.uniba.sk/mod/assign/view.php?id=40960 Moodle] (1x per group)
 
{{DUviac}} Submit in [https://moodle.uniba.sk/mod/assign/view.php?id=40960 Moodle] (1x per group)
 
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All assignments should be submitted to Moodle as a pdf (or as directed in the assignemnt) before the specified deadline.
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All assignments should be submitted to Moodle as a pdf (or as directed in the assignment) before the specified deadline.

Verzia zo dňa a času 06:55, 27. október 2023

When published Deadline for submitting
Quizes (Slovak only) Each Thursday 19:00 Next Wednesday 22:00
Quizzes in Moodle
Homework 1 Oct. 20, 2023 Nov. 8, 2023 22:00
Sequencing, alignment
Biologists: questions pdf, Excel table, moodle
Computer science: questions pdf, notebook template, moodle
Homework 2 Nov. 16, 2023 Nov. 29, 2023 22:00
Homework 3 Nov. 29, 2023 Dec. 13, 2023 22:00
Journal club paper selection Oct. 12, 2023 Oct. 18, 2023 22:00
Please submit the form
Journal club report Dec. 15, 2023 22:00
Submit in Moodle (1x per group)

All assignments should be submitted to Moodle as a pdf (or as directed in the assignment) before the specified deadline.