1-BIN-301, 2-AIN-501 Methods in Bioinformatics, 2023/24

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Homework assignments and journal club papers can be found in Tasks and dates.
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Journal club papers: Rozdiel medzi revíziami

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5. {{cite journal| author=Wapinski I, Pfeffer A, Friedman N, Regev A| title=Natural history and evolutionary principles of gene duplication in fungi | journal=Nature | year= 2007 | volume= 449 | issue= 7158 | pages= 54-61 | pmid=17805289 | doi=10.1038/nature06107 | url=http://www.eecs.ucf.edu/~shzhang/CAP6938/p7_nature06107_aviv_duplication.pdf}} '''Čítajú Gašpierik, Kokoška, Zdechovan, Dlugoš, Zimmerman, Harmady, Mandli'''
 
5. {{cite journal| author=Wapinski I, Pfeffer A, Friedman N, Regev A| title=Natural history and evolutionary principles of gene duplication in fungi | journal=Nature | year= 2007 | volume= 449 | issue= 7158 | pages= 54-61 | pmid=17805289 | doi=10.1038/nature06107 | url=http://www.eecs.ucf.edu/~shzhang/CAP6938/p7_nature06107_aviv_duplication.pdf}} '''Čítajú Gašpierik, Kokoška, Zdechovan, Dlugoš, Zimmerman, Harmady, Mandli'''
  
6. {{cite journal| author=Clamp M, Fry B, Kamal M, Xie X, Cuff J, Lin MF et al.| title=Distinguishing protein-coding and noncoding genes in the human genome. | journal=Proc Natl Acad Sci U S A | year= 2007 | volume= 104 | issue= 49 | pages= 19428-33 | pmid=18040051 | doi=10.1073/pnas.0709013104}} '''Čítajú Ďuricová, Cebecauer, Sabo, Kubascikova, Beke, Durkaj, Boža'''
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6. {{cite journal| author=Clamp M, Fry B, Kamal M, Xie X, Cuff J, Lin MF et al.| title=Distinguishing protein-coding and noncoding genes in the human genome. | journal=Proc Natl Acad Sci U S A | year= 2007 | volume= 104 | issue= 49 | pages= 19428-33 | pmid=18040051 | doi=10.1073/pnas.0709013104}} '''Čítajú Ďuricová, Cebecauer, Sabo, Kubaščíková, Beke, Durkaj, Boža'''
  
 
8. {{cite journal| author=Harbison CT, Gordon DB, Lee TI, Rinaldi NJ, Macisaac KD, Danford TW et al.| title=Transcriptional regulatory code of a eukaryotic genome. | journal=Nature | year= 2004 | volume= 431 | issue= 7004 | pages= 99-104 | pmid=15343339  | doi=10.1038/nature02800 | url=http://www.psrg.csail.mit.edu/pubs/nature-2004.pdf }} '''Čítajú Magyar, Krásna, Brázdovič, Nosál, Maurer'''
 
8. {{cite journal| author=Harbison CT, Gordon DB, Lee TI, Rinaldi NJ, Macisaac KD, Danford TW et al.| title=Transcriptional regulatory code of a eukaryotic genome. | journal=Nature | year= 2004 | volume= 431 | issue= 7004 | pages= 99-104 | pmid=15343339  | doi=10.1038/nature02800 | url=http://www.psrg.csail.mit.edu/pubs/nature-2004.pdf }} '''Čítajú Magyar, Krásna, Brázdovič, Nosál, Maurer'''

Verzia zo dňa a času 12:52, 27. október 2011

3. Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D (2003). "Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes.". Proc Natl Acad Sci U S A 100 (20): 11484-9. doi:10.1073/pnas.1932072100. PMID 14500911. Čítajú Bobák, Hudec, Višňovec, Lorincz, Juríková, Šelc

5. Wapinski I, Pfeffer A, Friedman N, Regev A (2007). "Natural history and evolutionary principles of gene duplication in fungi". Nature 449 (7158): 54-61. doi:10.1038/nature06107. PMID 17805289. Čítajú Gašpierik, Kokoška, Zdechovan, Dlugoš, Zimmerman, Harmady, Mandli

6. Clamp M, Fry B, Kamal M, Xie X, Cuff J, Lin MF et al. (2007). "Distinguishing protein-coding and noncoding genes in the human genome.". Proc Natl Acad Sci U S A 104 (49): 19428-33. doi:10.1073/pnas.0709013104. PMID 18040051. Čítajú Ďuricová, Cebecauer, Sabo, Kubaščíková, Beke, Durkaj, Boža

8. Harbison CT, Gordon DB, Lee TI, Rinaldi NJ, Macisaac KD, Danford TW et al. (2004). "Transcriptional regulatory code of a eukaryotic genome.". Nature 431 (7004): 99-104. doi:10.1038/nature02800. PMID 15343339. Čítajú Magyar, Krásna, Brázdovič, Nosál, Maurer

10. Sharan R, Suthram S, Kelley RM, Kuhn T, McCuine S, Uetz P et al. (2005). "Conserved patterns of protein interaction in multiple species.". Proc Natl Acad Sci U S A 102 (6): 1974-9. doi:10.1073/pnas.0409522102. PMID 15687504. Čítajú Slezáková, Kováč, Kéry, Duník, Kruľ

11. Andronescu M, Fejes AP, Hutter F, Hoos HH, Condon A (2004). "A new algorithm for RNA secondary structure design.". J Mol Biol 336 (3): 607-24. doi:10.1016/j.jmb.2003.12.041. PMID 15095976. Čítajú Cillingová, Ridzik, Sarič, Kislan, Lang, Kaniansky

12. Hernandez RD, Hubisz MJ, Wheeler DA, Smith DG, Ferguson B, Rogers J et al. (2007). "Demographic histories and patterns of linkage disequilibrium in Chinese and Indian rhesus macaques.". Science 316 (5822): 240-3. doi:10.1126/science.1140462. PMID 17431170. Čítajú Horanský, Litvaj, Kostolányi, Jančigová, Šándorová