1-BIN-301, 2-AIN-501 Methods in Bioinformatics, 2023/24
Journal club papers
Detaily ohľadom požiadavok na journal club nájdete v pravidlách predmetu.
1. David M, Dursi LJ, Yao D, Boutros PC, Simpson JT (2016). "Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data". Bioinformatics. Čítajú Baláž, Bérešová, Kováč, Psota, Smoľak, Szelleová
2. Lunter G (2007). "Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes.". Bioinformatics 23 (13): i289-96. Čítajú Fabianová, Forbak, Husár, Mišíková, Šomodi, Szendy
3. Wapinski I, Pfeffer A, Friedman N, Regev A (2007). "Natural history and evolutionary principles of gene duplication in fungi". Nature 449 (7158): 54-61. doi:10.1038/nature06107. (pozrite aj Online supplement) Čítajú Bakoš, Bilisics, Heinz, Kačír, Kolková, Kotrlová, Százová
4. Clamp M, Fry B, Kamal M, Xie X, Cuff J, Lin MF et al. (2007). "Distinguishing protein-coding and noncoding genes in the human genome.". Proc Natl Acad Sci U S A 104 (49): 19428-33. Čítajú Jamrichová, Koza, Mašlej, Ondriašová, Trubač, Zeman
5. Harbison CT, Gordon DB, Lee TI, Rinaldi NJ, Macisaac KD, Danford TW et al. (2004). "Transcriptional regulatory code of a eukaryotic genome.". Nature 431 (7004): 99-104. doi:10.1038/nature02800. Čítajú Borbová, Brojo, Bujna, Búran, Hadžega, Hoľa, Kellner
7. Andronescu M, Fejes AP, Hutter F, Hoos HH, Condon A (2004). "A new algorithm for RNA secondary structure design.". J Mol Biol 336 (3): 607-24. doi:10.1016/j.jmb.2003.12.041. Čítajú Adamec, Harmanová, Ištok, Krajčiová, Kvačkay, Mayerová, Mudroch
Nepoužité články
6. Heger, Andreas, and Liisa Holm (2003). "Exhaustive enumeration of protein domain families". Journal of molecular biology 328 (3): 749-67.
8. Breitkreutz A, Choi H, Sharom JR, Boucher L, Neduva V, Larsen B, Lin ZY, Breitkreutz BJ, Stark C, Liu G, Ahn J, Dewar-Darch D, Reguly T, Tang X, Almeida R, Qin ZS, Pawson T, Gingras AC, Nesvizhskii AI, Tyers M. (2010). "A global protein kinase and phosphatase interaction network in yeast". Science 328 (5981): 1043-6. doi:10.1126/science.1176495. (pozrite aj Online supplement)
