1-BIN-301, 2-AIN-501 Methods in Bioinformatics, 2022/23

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Journal club papers

Revízia z 21:46, 7. október 2009; Brona (Diskusia | príspevky)

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  1. Do CB, Mahabhashyam MS, Brudno M, Batzoglou S (2005). "ProbCons: Probabilistic consistency-based multiple sequence alignment.". Genome Res 15 (2): 330-40. PMID 15687296.
  2. Lunter G (2007). "Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes.". Bioinformatics 23 (13): i289-96. doi:10.1093/bioinformatics/btm185. PMID 17646308.
  3. Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D (2003). "Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes.". Proc Natl Acad Sci U S A 100 (20): 11484-9. doi:10.1073/pnas.1932072100. PMID 14500911.
  4. Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, Rosenbloom K et al. (2005). "Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes". Genome Res 15 (8): 1034-50. doi:10.1101/gr.3715005. PMID 16024819.
  5. Wapinski I, Pfeffer A, Friedman N, Regev A (2007). "Natural history and evolutionary principles of gene duplication in fungi". Nature 449 (7158): 54-61. doi:10.1038/nature06107. PMID 17805289.
  6. Clamp M, Fry B, Kamal M, Xie X, Cuff J, Lin MF et al. (2007). "Distinguishing protein-coding and noncoding genes in the human genome.". Proc Natl Acad Sci U S A 104 (49): 19428-33. doi:10.1073/pnas.0709013104. PMID 18040051.
  7. Eisen MB, Spellman PT, Brown PO, Botstein D (1998). "Cluster analysis and display of genome-wide expression patterns.". Proc Natl Acad Sci U S A 95 (25): 14863-8. PMID 9843981.
  8. Harbison CT, Gordon DB, Lee TI, Rinaldi NJ, Macisaac KD, Danford TW et al. (2004). "Transcriptional regulatory code of a eukaryotic genome.". Nature 431 (7004): 99-104. doi:10.1038/nature02800. PMID 15343339.
  9. Bystroff C, Baker D (1998). "Prediction of local structure in proteins using a library of sequence-structure motifs.". J Mol Biol 281 (3): 565-77. doi:10.1006/jmbi.1998.1943. PMID 9698570.
  10. Sharan R, Suthram S, Kelley RM, Kuhn T, McCuine S, Uetz P et al. (2005). "Conserved patterns of protein interaction in multiple species.". Proc Natl Acad Sci U S A 102 (6): 1974-9. doi:10.1073/pnas.0409522102. PMID 15687504.
  11. Andronescu M, Fejes AP, Hutter F, Hoos HH, Condon A (2004). "A new algorithm for RNA secondary structure design.". J Mol Biol 336 (3): 607-24. doi:10.1016/j.jmb.2003.12.041. PMID 15095976.
  12. Hernandez RD, Hubisz MJ, Wheeler DA, Smith DG, Ferguson B, Rogers J et al. (2007). "Demographic histories and patterns of linkage disequilibrium in Chinese and Indian rhesus macaques.". Science 316 (5822): 240-3. doi:10.1126/science.1140462. PMID 17431170.