1-BIN-301, 2-AIN-501 Methods in Bioinformatics, 2022/23

Introduction · Rules · Tasks and dates · Materials · Moodle · Discussion
Quizzes can be found in Moodle.
Homework assignments and journal club papers can be found in Tasks and dates.
Groups for journal club have each their own channel in MS Teams.


Tasks and dates: Rozdiel medzi revíziami

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| style="background:#f0f0f0" | '''Dátum zverejnenia'''
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| style="background:#f0f0f0" | '''When published'''
| style="background:#f0f0f0" | '''Termín odovzdania'''  
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| style="background:#f0f0f0" | '''Deadline for submitting'''  
| style="background:#f0f0f0" | '''Zadanie'''
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| style="background:#f0f0f0" | '''Questions'''
{{DU | Domáca úloha 1 | 17.10.2019 | 14.11.2019 do 14:00 (inf) resp. 15:40 (bio)| inf: {{pdf|a1i}}, bio: {{pdf|a1b}} }}
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{{DU | Quizes (Slovak only) | Each Thursday 19:00  | Next Wednesday 22:00 | }}
{{DUviac}} Sekvenovanie, zarovnávanie<br>Súbory pre biológov: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/du1/du1-b.xls Excelová tabuľka]<br>Moodle: [https://moodle.uniba.sk/moodle/inf11/mod/assign/view.php?id=28056 informatici], [https://moodle.uniba.sk/moodle/inf11/mod/assign/view.php?id=28057 biológovia]
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{{DUviac}} [https://moodle.uniba.sk/course/view.php?id=2160 Quizzes in Moodle]
 
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{{DU | Domáca úloha 2 | 21.11.2019 | 5.12.2019 do 14:00 (inf) resp. 15:40 (bio) | <!-- inf: {{pdf|a2i}}, bio: {{pdf|a2b}} --> }}
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{{DU | Homework 1 | Oct. 14, 2021 | November 9, 2021 22:00| inf: {{pdf|a1i-en}}, bio: {{pdf|a1b}} }}
{{DUviac}} HMM, evolúcia, komparatívna genomika<!-- <br>Súbory pre informatikov: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/a2-i.zip zip]<br>Informatici odovzdávajú kód v systéme [https://moodle.uniba.sk/moodle/inf11/mod/assign/view.php?id=24498 Moodle] -->
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{{DUviac}} Sequencing, alignment<br>Files for biologists: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/du1/du1-b.xls Excel table]<br>Moodle: [https://moodle.uniba.sk/mod/assign/view.php?id=40955 inf], [https://moodle.uniba.sk/mod/assign/view.php?id=40956 bio]
 
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{{DU | Domáca úloha 3 | 5.12.2019 | 19.12.2019 do 22:00 | <!-- {{pdf|a3}} --> }}
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{{DU | Homework 2 | Nov. 11, 2021 | Nov. 30, 2021 22:00 | inf: {{pdf|a2i-en}}, bio: {{pdf|a2b}} }}
{{DUviac}} Proteíny, RNA <!--<br>Sekvencia: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/a3.fasta fasta]<br>Odovzdajte na papieri alebo cez [https://moodle.uniba.sk/moodle/inf11/mod/assign/view.php?id=24499 Moodle] -->
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{{DUviac}} Evolution, comparative genomics <br>Files for computer scientists: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/a2-i.zip zip]<br>Moodle: [https://moodle.uniba.sk/mod/assign/view.php?id=40957 inf], [https://moodle.uniba.sk/mod/assign/view.php?id=40958 bio]
 
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{{DU | Výber článku na journal club | 10.10.2019 | 22.10.2019 do 22:00 | [[Články_na_journal_club|zoznam článkov a formulár]] }}
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{{DU | Homework 3 | Nov. 30, 2021 | Dec. 14, 2021 22:00 | {{pdf|a3-en}} }}
{{DUviac}} Vyplňte formulár
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{{DUviac}} Proteins, RNA<br>Sequence: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/a3.fasta fasta]<br>[https://moodle.uniba.sk/mod/assign/view.php?id=40959 Moodle]
{{DU | Správa zo journal clubu | | 20.12.2019 do 22:00|  }}
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<!-- {{DUviac}} Odovzdať v [https://moodle.uniba.sk/moodle/inf11/mod/assign/view.php?id=24500 Moodli] v pdf formáte (1x za skupinu)-->
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{{DU | Journal club paper selection | Oct. 14, 2021 | Oct. 20, 2021 22:00 | [[Journal club papers|list of papers and form]] }}
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{{DUviac}} Please submit the form
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{{DU | Journal club report | | Dec. 17, 2021 22:00|  }}
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{{DUviac}} Submit in [https://moodle.uniba.sk/mod/assign/view.php?id=40960 Moodle] (1x per group)  
 
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Ak nie je v zadaní povedané inak, domáce úlohy odovzdávajte v pdf verzii do systému Moodle alebo v papierovej podobe na vyučovacej hodine, najneskôr do uvedeného termínu.
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All assignments should be submitted to Moodle as a pdf before the specified deadline.

Verzia zo dňa a času 07:52, 10. december 2021

When published Deadline for submitting Questions
Quizes (Slovak only) Each Thursday 19:00 Next Wednesday 22:00
Quizzes in Moodle
Homework 1 Oct. 14, 2021 November 9, 2021 22:00 inf: pdf, bio: pdf
Sequencing, alignment
Files for biologists: Excel table
Moodle: inf, bio
Homework 2 Nov. 11, 2021 Nov. 30, 2021 22:00 inf: pdf, bio: pdf
Evolution, comparative genomics
Files for computer scientists: zip
Moodle: inf, bio
Homework 3 Nov. 30, 2021 Dec. 14, 2021 22:00 pdf
Proteins, RNA
Sequence: fasta
Moodle
Journal club paper selection Oct. 14, 2021 Oct. 20, 2021 22:00 list of papers and form
Please submit the form
Journal club report Dec. 17, 2021 22:00
Submit in Moodle (1x per group)

All assignments should be submitted to Moodle as a pdf before the specified deadline.