1-BIN-301, 2-AIN-501 Methods in Bioinformatics, 2023/24

Introduction · Rules · Tasks and dates · Materials · Moodle
Quizzes can be found in Moodle.
Homework assignments and journal club papers can be found in Tasks and dates.
Exam rules, example questions and syllabus
Groups for journal club have each their own group in Moodle.


Tasks and dates: Rozdiel medzi revíziami

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| style="background:#f0f0f0" | '''Dátum zverejnenia'''
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| style="background:#f0f0f0" | '''When published'''
| style="background:#f0f0f0" | '''Termín odovzdania'''  
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| style="background:#f0f0f0" | '''Deadline for submitting'''  
| style="background:#f0f0f0" | '''Zadanie'''
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| style="background:#f0f0f0" | '''Questions'''
{{DU | Kvízy | štvrtok 19:00  | Ďalšia streda 22:00 | }}
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{{DU | Quizes (Slovak only) | Each Thursday 19:00  | Next Wednesday 22:00 | }}
{{DUviac}} [https://moodle.uniba.sk/course/view.php?id=2160 Vypĺňajte v Moodli]
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{{DUviac}} [https://moodle.uniba.sk/course/view.php?id=2160 Quizzes in Moodle]
 
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{{DU | Domáca úloha 1 | 15.10.2020 | 10.11.2020 do 22:00| <!-- inf: {{pdf|a1i}}, bio: {{pdf|a1b}} --> }}
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{{DU | Homework 1 | Oct. 13, 2022 | Nov. 8, 2022 22:00| inf: {{pdf|a1i}}, bio: {{pdf|a1b}} }}
<!-- {{DUviac}} Sekvenovanie, zarovnávanie<br>Súbory pre biológov: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/du1/du1-b.xls Excelová tabuľka]<br>Moodle: [https://moodle.uniba.sk/moodle/inf11/mod/assign/view.php?id=28056 informatici], [https://moodle.uniba.sk/moodle/inf11/mod/assign/view.php?id=28057 biológovia] -->
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{{DUviac}} Sequencing, alignment<br>Files for biologists: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/du1/du1-b.xls Excel table]<br>Moodle: [https://moodle.uniba.sk/mod/assign/view.php?id=40955 inf], [https://moodle.uniba.sk/mod/assign/view.php?id=40956 bio]
 
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{{DU | Domáca úloha 2 | 12.11.2020 | 1.12.2020 do 22:00 | <!-- inf: {{pdf|a2i}}, bio: {{pdf|a2b}} --> }}
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{{DU | Homework 2 | Nov. 10, 2022 | Nov. 29, 2022 22:00 | inf: {{pdf|a2i}}, bio: {{pdf|a2b}} }}
<!-- {{DUviac}} HMM, evolúcia, komparatívna genomika <br>Súbory pre informatikov: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/a2-i.zip zip]<br>Moodle: [https://moodle.uniba.sk/moodle/inf11/mod/assign/view.php?id=27176 informatici], [https://moodle.uniba.sk/moodle/inf11/mod/assign/view.php?id=28055 biológovia] -->
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{{DUviac}} Evolution, comparative genomics <br>Files for computer scientists: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/a2-i.zip zip]<br>Moodle: [https://moodle.uniba.sk/mod/assign/view.php?id=40957 inf], [https://moodle.uniba.sk/mod/assign/view.php?id=40958 bio]
 
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{{DU | Domáca úloha 3 | 26.11.2020 | 15.12.2020 do 22:00 | <!-- {{pdf|a3}} --> }}
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{{DU | Homework 3 | Nov. 29, 2022 | Dec. 13, 2022 22:00 | {{pdf|a3-en}} }}
<!-- {{DUviac}} Proteíny, RNA <br>Sekvencia: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/a3.fasta fasta]<br>[https://moodle.uniba.sk/moodle/inf11/mod/assign/view.php?id=27177 Moodle] -->
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{{DUviac}} Proteins, RNA<br>Sequence: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/a3.fasta fasta]<br>AlphaFold2 results: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/a3-orf1.png orf1], [http://compbio.fmph.uniba.sk/vyuka/mbi-data/a3-orf3.png orf3]<br>[https://moodle.uniba.sk/mod/assign/view.php?id=40959 Moodle]
 
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{{DU | Výber článku na journal club | 8.10.2020 | 20.10.2020 do 22:00 | <!-- [[Články_na_journal_club|zoznam článkov a formulár]]--> }}
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{{DU | Journal club paper selection | Oct. 13, 2022 | Oct. 19, 2022 22:00 | [[Journal club papers|list of papers and form]] }}
<!-- {{DUviac}} Vyplňte formulár -->
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{{DUviac}} Please submit the form
{{DU | Správa zo journal clubu | | 18.12.2020 do 22:00|  }}
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{{DU | Journal club report | | Dec. 16, 2022 22:00|  }}
<!-- {{DUviac}} Odovzdať v [https://moodle.uniba.sk/moodle/inf11/mod/assign/view.php?id=27178 Moodli] v pdf formáte (1x za skupinu) -->
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{{DUviac}} Submit in [https://moodle.uniba.sk/mod/assign/view.php?id=40960 Moodle] (1x per group)
 
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Ak nie je v zadaní povedané inak, domáce úlohy odovzdávajte v pdf verzii do systému Moodle najneskôr do uvedeného termínu.
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All assignments should be submitted to Moodle as a pdf before the specified deadline.

Verzia zo dňa a času 13:32, 30. november 2022

When published Deadline for submitting Questions
Quizes (Slovak only) Each Thursday 19:00 Next Wednesday 22:00
Quizzes in Moodle
Homework 1 Oct. 13, 2022 Nov. 8, 2022 22:00
Sequencing, alignment
Files for biologists: Excel table
Moodle: inf, bio
Homework 2 Nov. 10, 2022 Nov. 29, 2022 22:00
Evolution, comparative genomics
Files for computer scientists: zip
Moodle: inf, bio
Homework 3 Nov. 29, 2022 Dec. 13, 2022 22:00
Proteins, RNA
Sequence: fasta
AlphaFold2 results: orf1, orf3
Moodle
Journal club paper selection Oct. 13, 2022 Oct. 19, 2022 22:00
Please submit the form
Journal club report Dec. 16, 2022 22:00
Submit in Moodle (1x per group)

All assignments should be submitted to Moodle as a pdf before the specified deadline.