1-BIN-301, 2-AIN-501 Methods in Bioinformatics, 2023/24

Introduction · Rules · Tasks and dates · Materials · Moodle
Quizzes can be found in Moodle.
Homework assignments and journal club papers can be found in Tasks and dates.
Exam rules, example questions and syllabus
Groups for journal club have each their own group in Moodle.


Tasks and dates: Rozdiel medzi revíziami

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| style="background:#f0f0f0" | '''When published'''
 
| style="background:#f0f0f0" | '''When published'''
 
| style="background:#f0f0f0" | '''Deadline for submitting'''  
 
| style="background:#f0f0f0" | '''Deadline for submitting'''  
| style="background:#f0f0f0" | '''Questions'''
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{{DU | Quizes (Slovak only) | Each Thursday 19:00  | Next Wednesday 22:00 }}
{{DU | Quizes (Slovak only) | Each Thursday 19:00  | Next Wednesday 22:00 | }}
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{{DUviac}} [https://moodle.uniba.sk/course/view.php?id=2160 Quizzes in Moodle]
{{DUviac}} [https://moodle.uniba.sk/course/view.php?id=2160 Answer in Moodle]
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{{DU | Homework 1 | Oct. 14, 2021 | November 9, 2021 22:00| <!-- inf: {{pdf|a1i}}, bio: {{pdf|a1b}}--> }}
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{{DU | Homework 1 | Oct. 20, 2023 | Nov. 8, 2023 22:00}}
{{DUviac}} Sequencing, alignment<!-- <br>Súbory pre biológov: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/du1/du1-b.xls Excelová tabuľka]<br>Moodle: [https://moodle.uniba.sk/mod/assign/view.php?id=40955 informatici], [https://moodle.uniba.sk/mod/assign/view.php?id=40956 biológovia] -->
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{{DUviac}} Sequencing, alignment<br>Biologists: questions {{pdf|a1b}}, [https://compbio.fmph.uniba.sk/vyuka/mbi-data/du1/du1-b.xls Excel table], [https://moodle.uniba.sk/mod/assign/view.php?id=40956 Moodle]<br>Computer science: questions {{pdf|hw1}}, [https://compbio.fmph.uniba.sk/vyuka/mbi-data/du1/hw1-template.ipynb notebook template], [https://moodle.uniba.sk/mod/assign/view.php?id=40955 Moodle]
 
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{{DU | Homework 2 | Nov. 11, 2021 | Nov. 30, 2021 22:00 | <!-- inf: {{pdf|a2i}}, bio: {{pdf|a2b}}--> }}
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{{DU | Homework 2 | Nov. 9, 2023 | Nov. 29, 2023 22:00 }}
{{DUviac}} Evolution, comparative genomics <!--<br>Súbory pre informatikov: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/a2-i.zip zip]<br>Moodle: [https://moodle.uniba.sk/mod/assign/view.php?id=40957 informatici], [https://moodle.uniba.sk/mod/assign/view.php?id=40958 biológovia]-->
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{{DUviac}} Evolution, comparative genomics <br>Biologists: questions {{pdf|a2b}}, [https://moodle.uniba.sk/mod/assign/view.php?id=40958 Moodle]<br>Computer science: questions {{pdf|a2i-en}}, data [https://compbio.fmph.uniba.sk/vyuka/mbi-data/a2-i.zip zip], [https://moodle.uniba.sk/mod/assign/view.php?id=40957 Moodle]  
 
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{{DU | Homework 3 | Nov. 30, 2021 | Dec. 14, 2021 22:00 | <!--{{pdf|a3}}--> }}
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{{DU | Homework 3 | Nov. 30, 2023 | Dec. 13, 2023 22:00 }}
{{DUviac}} Proteins, RNA <!--<br>Sekvencia: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/a3.fasta fasta]<br>[https://moodle.uniba.sk/mod/assign/view.php?id=40959 Moodle]-->
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{{DUviac}} Proteins, RNA<br>Biologists: questions {{pdf|a3b-en}}, [https://moodle.uniba.sk/mod/assign/view.php?id=116962 Moodle]<br>Computer science: questions {{pdf|a3i-en}}, [https://moodle.uniba.sk/mod/assign/view.php?id=116961 Moodle]<br>Both: [https://compbio.fmph.uniba.sk/vyuka/mbi-data/a3.fasta sequence], AlphaFold2 results for [https://compbio.fmph.uniba.sk/vyuka/mbi-data/a3-orf1.png orf1], [https://compbio.fmph.uniba.sk/vyuka/mbi-data/a3-orf3.png orf3]
 
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{{DU | Journal club paper selection | Oct. 14, 2021 | Oct. 20, 2021 22:00 | <!--[[Články_na_journal_club|zoznam článkov a formulár]]--> }}
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{{DU | Journal club paper selection | Oct. 12, 2023 | Oct. 18, 2023 22:00 | [[Journal club papers|list of papers and form]] }}
<!-- {{DUviac}} Vyplňte formulár-->
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{{DUviac}} Please submit the form
{{DU | Journal club report | | Dec. 17, 2021 22:00|  }}
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{{DU | Journal club report | | Dec. 15, 2023 22:00|  }}
<!-- {{DUviac}} Odovzdať v [https://moodle.uniba.sk/mod/assign/view.php?id=40960 Moodli] v pdf formáte (1x za skupinu) -->
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{{DUviac}} Submit in [https://moodle.uniba.sk/mod/assign/view.php?id=40960 Moodle] (1x per group)
 
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All assignments should be submitted to Moodle as a pdf before the specified deadline.
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All assignments should be submitted to Moodle as a pdf (or as directed in the assignment) before the specified deadline.

Aktuálna revízia z 15:21, 30. november 2023

When published Deadline for submitting
Quizes (Slovak only) Each Thursday 19:00 Next Wednesday 22:00
Quizzes in Moodle
Homework 1 Oct. 20, 2023 Nov. 8, 2023 22:00
Sequencing, alignment
Biologists: questions pdf, Excel table, Moodle
Computer science: questions pdf, notebook template, Moodle
Homework 2 Nov. 9, 2023 Nov. 29, 2023 22:00
Evolution, comparative genomics
Biologists: questions pdf, Moodle
Computer science: questions pdf, data zip, Moodle
Homework 3 Nov. 30, 2023 Dec. 13, 2023 22:00
Proteins, RNA
Biologists: questions pdf, Moodle
Computer science: questions pdf, Moodle
Both: sequence, AlphaFold2 results for orf1, orf3
Journal club paper selection Oct. 12, 2023 Oct. 18, 2023 22:00
Please submit the form
Journal club report Dec. 15, 2023 22:00
Submit in Moodle (1x per group)

All assignments should be submitted to Moodle as a pdf (or as directed in the assignment) before the specified deadline.