1-BIN-301, 2-AIN-501 Methods in Bioinformatics, 2022/23

Introduction · Rules · Tasks and dates · Materials · Moodle · Discussion
Quizzes can be found in Moodle.
Homework assignments and journal club papers can be found in Tasks and dates.
Groups for journal club have each their own channel in MS Teams.


Tasks and dates: Rozdiel medzi revíziami

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{{DUviac}} [https://moodle.uniba.sk/course/view.php?id=2160 Quizzes in Moodle]
 
{{DUviac}} [https://moodle.uniba.sk/course/view.php?id=2160 Quizzes in Moodle]
 
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{{DU | Homework 1 | Oct. 14, 2021 | November 9, 2021 22:00| inf: {{pdf|a1i-en}}, bio: {{pdf|a1b}} }}
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{{DU | Homework 1 | Oct. 13, 2022 | Nov. 8, 2022 22:00| inf: {{pdf|a1i}}, bio: {{pdf|a1b}} }}
 
{{DUviac}} Sequencing, alignment<br>Files for biologists: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/du1/du1-b.xls Excel table]<br>Moodle: [https://moodle.uniba.sk/mod/assign/view.php?id=40955 inf], [https://moodle.uniba.sk/mod/assign/view.php?id=40956 bio]
 
{{DUviac}} Sequencing, alignment<br>Files for biologists: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/du1/du1-b.xls Excel table]<br>Moodle: [https://moodle.uniba.sk/mod/assign/view.php?id=40955 inf], [https://moodle.uniba.sk/mod/assign/view.php?id=40956 bio]
 
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{{DU | Homework 2 | Nov. 11, 2021 | Nov. 30, 2021 22:00 | inf: {{pdf|a2i-en}}, bio: {{pdf|a2b}} }}
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{{DU | Homework 2 | Nov. 10, 2022 | Nov. 29, 2022 22:00 | inf: {{pdf|a2i}}, bio: {{pdf|a2b}} }}
 
{{DUviac}} Evolution, comparative genomics <br>Files for computer scientists: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/a2-i.zip zip]<br>Moodle: [https://moodle.uniba.sk/mod/assign/view.php?id=40957 inf], [https://moodle.uniba.sk/mod/assign/view.php?id=40958 bio]
 
{{DUviac}} Evolution, comparative genomics <br>Files for computer scientists: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/a2-i.zip zip]<br>Moodle: [https://moodle.uniba.sk/mod/assign/view.php?id=40957 inf], [https://moodle.uniba.sk/mod/assign/view.php?id=40958 bio]
 
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{{DU | Homework 3 | Nov. 30, 2021 | Dec. 14, 2021 22:00 | {{pdf|a3}} }}
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{{DU | Homework 3 | Nov. 29, 2022 | Dec. 13, 2022 22:00 | {{pdf|a3-en}} }}
{{DUviac}} Proteins, RNA<br>Sequence: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/a3.fasta fasta]<br>[https://moodle.uniba.sk/mod/assign/view.php?id=40959 Moodle]
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{{DUviac}} Proteins, RNA<br>Sequence: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/a3.fasta fasta]<br>AlphaFold2 results: [http://compbio.fmph.uniba.sk/vyuka/mbi-data/a3-orf1.png orf1], [http://compbio.fmph.uniba.sk/vyuka/mbi-data/a3-orf3.png orf3]<br>[https://moodle.uniba.sk/mod/assign/view.php?id=40959 Moodle]
 
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{{DU | Journal club paper selection | Oct. 14, 2021 | Oct. 20, 2021 22:00 | [[Journal club papers|list of papers and form]] }}
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{{DU | Journal club paper selection | Oct. 13, 2022 | Oct. 19, 2022 22:00 | [[Journal club papers|list of papers and form]] }}
 
{{DUviac}} Please submit the form
 
{{DUviac}} Please submit the form
{{DU | Journal club report | | Dec. 17, 2021 22:00|  }}
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{{DU | Journal club report | | Dec. 16, 2022 22:00|  }}
{{DUviac}} Submit in [https://moodle.uniba.sk/mod/assign/view.php?id=40960 Moodle] (1x per group)  
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{{DUviac}} Submit in [https://moodle.uniba.sk/mod/assign/view.php?id=40960 Moodle] (1x per group)
 
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All assignments should be submitted to Moodle as a pdf before the specified deadline.
 
All assignments should be submitted to Moodle as a pdf before the specified deadline.

Aktuálna revízia z 13:32, 30. november 2022

When published Deadline for submitting Questions
Quizes (Slovak only) Each Thursday 19:00 Next Wednesday 22:00
Quizzes in Moodle
Homework 1 Oct. 13, 2022 Nov. 8, 2022 22:00 inf: pdf, bio: pdf
Sequencing, alignment
Files for biologists: Excel table
Moodle: inf, bio
Homework 2 Nov. 10, 2022 Nov. 29, 2022 22:00 inf: pdf, bio: pdf
Evolution, comparative genomics
Files for computer scientists: zip
Moodle: inf, bio
Homework 3 Nov. 29, 2022 Dec. 13, 2022 22:00 pdf
Proteins, RNA
Sequence: fasta
AlphaFold2 results: orf1, orf3
Moodle
Journal club paper selection Oct. 13, 2022 Oct. 19, 2022 22:00 list of papers and form
Please submit the form
Journal club report Dec. 16, 2022 22:00
Submit in Moodle (1x per group)

All assignments should be submitted to Moodle as a pdf before the specified deadline.