2-AIN-506, 2-AIN-252: Seminar in Bioinformatics (2), (4)
Summer 2025
Schedule

Time and place:
Wednesday 17:20, I-23 or online in MS Teams.
Instructors:
doc. Mgr. Tomáš Vinař, PhD	M-163,

doc. Mgr. Broňa Brejová, PhD	M-163,

Seminar schedule:
Short talk schedule

2025-02-19 Broňa Brejová	Endre Neparaczki, Luca Kis, Zoltan Maroti, Bence Kovacs, Gergely I. B. Varga, Miklos Makoldi, Pamjav Horolma, Eva Teiszler, Balazs Tihanyi, Peter L. Nagy, Kitti Maar, Attila Gyenesei, Oszkar Schutz, Eszter Dudas, Tibor Torok, Vesna Pascuttini-Juraga, Ivancica Peharda, Laszlo Tamas Vizi, Gabor Horvath-Lugossy, Miklos Kasler. The genetic legacy of the Hunyadi descendants. Heliyon, 2022. link
2025-02-26 Luca Denti	AJ Petri, K Sahlin. De novo clustering of extensive long-read transcriptome datasets with isONclust3. bioRxiv, 2024. link
2025-03-05 Yoshihiro Shibuya	Qiong Chen, Boliang Zhang, Chen Peng, Jiajun Huang, Xiaotao Shen, Chao Jiang. Kun-peng: an ultra-memory-efficient, fast, and accurate pan-domain taxonomic classifier for all. bioRxiv, 2024. link
2025-03-12 Filip Kerák	Yanglan Gan, Yuhan Chen, Guangwei Xu, Wenjing Guo, Guobing Zou. Deep enhanced constraint clustering based on contrastive learning for scRNA-seq data. Briefings in bioinformatics, 2023. link
2025-03-19 Monika Buchalová	Petar Veličković, Guillem Cucurull, Arantxa Casanova, Adriana Romero, Pietro Lio, Yoshua Bengio. Graph Attention Networks. arXiv, 2017. link
2025-03-26 no seminar
2025-04-02 Peter Zigman
2025-04-09 no seminar	Student research conference
2025-04-16 Tomáš Vinař	Davide Bolognini, Alma Halgren, Runyang Nicolas Lou, Alessandro Raveane, Joana L. Rocha, Andrea Guarracino, Nicole Soranzo, Chen-Shan Chin, Erik Garrison, Peter H. Sudmant. Recurrent evolution and selection shape structural diversity at the amylase locus. Nature, 2024. link
2025-04-23 no seminar?
2025-04-30 František V. Man	Roman Sarrazin-Gendron, Parham {Ghasemloo Gheidari}, Alexander Butyaev, Timothy Keding, Eddie Cai, Jiayue Zheng, Renata Mutalova, Julien Mounthanyvong, Yuxue Zhu, Elena Nazarova, Chrisostomos Drogaris, Kornel Erhart, Amelie Brouillette, Gabriel Richard, Randy Pitchford, Sebastien Caisse, Mathieu Blanchette, Daniel McDonald, Rob Knight, Attila Szantner, Jerome Waldispuhl. Improving microbial phylogeny with citizen science within a mass-market video game. Nature biotechnology, 2025. link
2025-05-07	Chen-Shan Chin, Sairam Behera, Asif Khalak, Fritz J. Sedlazeck, Peter H. Sudmant, Justin Wagner, Justin M. Zook. Multiscale analysis of pangenomes enables improved representation of genomic diversity for repetitive and clinically relevant genes. Nature methods, 2023. link
2025-05-14
2025-05-21 no seminar?