2-AIN-506 a 2-AIN-252: Seminár z bioinformatiky (2) a (4)
Leto 2011 (archívna kópia)
Rozvrh


Rozvrh | Základné informácie | Zoznam článkov | Predchádzajúce semestre

Seminár:
Utorok 17:20, I-9
 
Vyučujúci:
Mgr. Tomáš Vinař, PhD M-163,
Konzultačné hodiny: TBA
 
Oznamy:
Prvé stretnutie pre tento semester bude v utorok 15.2. Ak sa plánujete seminára zúčastňovať, ale nemôžete prísť na stretnutie, prosím pošlite mi e-mail, aby sme mohli prispôsobiť organizáciu počtu ľudí.
 
Zoznam prezentácií:
15.2.2011
Tomáš Vinař

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Zasha Weinberg, Joy X. Wang, Jarrod Bogue, Jingying Yang, Keith Corbino, Ryan H. Moy, Ronald R. Breaker.
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Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes.
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Genome biology,
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2010.
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22.2.2011
Peter Kováč

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Richard M. Durbin, Goncalo R. Abecasis, David L. Altshuler, Adam Auton, Lisa D. Brooks, Richard M. Durbin, Richard A. Gibbs, Matt E. Hurles, Gil A. McVean.
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A map of human genome variation from population-scale sequencing.
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Nature,
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2010.
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1.3.2011
Laci Rampášek

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A. Biegert, J. Soding.
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Sequence context-specific profiles for homology searching.
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Proceedings of the National Academy of Sciences of the United States of America,
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2009.
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8.3.2011
Jakub Kováč

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Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulenstein, David Fernandez-Baca.
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Robinson-Foulds supertrees.
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Algorithms Mol Biol,
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2010.
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15.3.2011
Jaro Budiš

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John Hawkins, Charles Grant, William Stafford Noble, Timothy L. Bailey.
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Assessing phylogenetic motif models for predicting transcription factor binding sites.
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Bioinformatics,
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2009.
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22.3.2011
Lenka Trojáková

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Xin Yi et al..
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Sequencing of 50 human exomes reveals adaptation to high altitude.
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Science,
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2010.
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29.3.2011
Martin Králik

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Aakrosh Ratan, Yu Zhang, Vanessa M. Hayes, Stephan C. Schuster, Webb Miller.
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Calling SNPs without a reference sequence.
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BMC bioinformatics,
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2010.
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5.4.2011
Ivana Selečéniová

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Raheleh Salari, Cagri Aksay, Emre Karakoc, Peter J. Unrau, Iman Hajirasouliha, S. Cenk Sahinalp.
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smyRNA: a novel Ab initio ncRNA gene finder.
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PLoS One,
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2009.
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12.4.2011
Pavol Kmeč

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Seungtai Yoon, Zhenyu Xuan, Vladimir Makarov, Kenny Ye, Jonathan Sebat.
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Sensitive and accurate detection of copy number variants using read depth of coverage.
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Genome research,
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2009.
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18.4.2011 (pondelok!)
Marcel Kucharík

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Benedict Paten, Mark Diekhans, Dent Earl, John St John, Jian Ma, Bernard Suh, David Haussler.
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Cactus graphs for genome comparisons.
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Journal of computational biology,
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2011.
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27.4.2011 (streda!)
Maťo Kravec

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Melissa J. Hubisz, Michael F. Lin, Manolis Kellis, Adam Siepel.
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Error and error mitigation in low-coverage genome assemblies.
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PLoS One,
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2011.
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3.5.2011
Jožo Vavro

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Michal Ziv-Ukelson, Irit Gat-Viks, Ydo Wexler, Ron Shamir.
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A faster algorithm for simultaneous alignment and folding of RNA.
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Journal of Computational Biology,
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2010.
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Tento článok je už rezervovaný (J. Vavro). link
10.5.2011
Martin Macko

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Jeffrey Skolnick, Adrian K. Arakaki, Seung Yup Lee, Michal Brylinski.
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The continuity of protein structure space is an intrinsic property of proteins.
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Proceedings of the National Academy of Sciences of the United States of America,
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2009.
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17.5.2011
Lukáš Bača

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Christian Widmer, Jose Leiva, Yasemin Altun, Gunnar Raetsch.
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Leveraging Sequence Classification by Taxonomy-Based Multitask Learning. In
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RECOMB,
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2010.
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