2-AIN-505, 2-AIN-251: Seminár z bioinformatiky (1) a (3)
Zima 2011
Rozvrh

Seminár:
Utorok 17:20, I-9
Vyučujúci:
Mgr. Tomáš Vinař, PhD	M-163,
Konzultačné hodiny: TBA
Oznamy:
Zoznam prezentácií:

20.9.2011 Tomáš Vinař	Can Alkan, Maria Francesca Cardone, Claudia Rita Catacchio, Francesca Antonacci, Stephen J. O'Brien, Oliver A. Ryder, Stefania Purgato, Monica Zoli, Giuliano Della Valle, Evan E. Eichler, Mario Ventura. Genome-wide characterization of centromeric satellites from multiple mammalian genomes. Genome research, 2011. link
27.9.2011 Kubo Kováč	Cedric Chauve, Haris Gavranovic, Aida Ouangraoua, Eric Tannier. Yeast ancestral genome reconstructions: the possibilities of computational methods II. Journal of computational biology, 2010. link
4.10.2011 Pali Kmeč, Peter Balko	Adam R. Boyko, Pascale Quignon, Lin Li, Jeffrey J. Schoenebeck, Jeremiah D. Degenhardt, Kirk E. Lohmueller, Keyan Zhao, Abra Brisbin, Heidi G. Parker, Bridgett M. vonHoldt, Michele Cargill, Adam Auton, Andy Reynolds, Abdel G. Elkahloun, Marta Castelhano, Dana S. Mosher, Nathan B. Sutter, Gary S. Johnson, John Novembre, Melissa J. Hubisz, Adam Siepel, Robert K. Wayne, Carlos D. Bustamante, Elaine A. Ostrander. A simple genetic architecture underlies morphological variation in dogs. PLoS Biology, 2010. link
11.10.2011 Martin Kravec	Christos Kozanitis, Chris Saunders, Semyon Kruglyak, Vineet Bafna, George Varghese. Compressing Genomic Sequence Fragments Using SlimGene. Journal of computational biology, 2011. link
18.10.2011 Martin Králik	Jianxing Feng, Wei Li, Tao Jiang. Inference of isoforms from short sequence reads. Journal of computational biology, 2011. link
25.10.2011 Katka Juríková	Tamir Tuller, Asaf Carmi, Kalin Vestsigian, Sivan Navon, Yuval Dorfan, John Zaborske, Tao Pan, Orna Dahan, Itay Furman, Yitzhak Pilpel. An evolutionarily conserved mechanism for controlling the efficiency of protein translation. Cell, 2010. link
1.11.2011 Sviatok všetkých svätých
8.11.2011 Vlado Boža	Péter L. Erdős, Lajos Soukup, Jens Stoye. Balanced vertices in trees and a simpler algorithm to compute the genomic distance. Applied Mathematics Letters, 2010. link
15.11.2011 Peter Kováč	Alexander Schoenhuth, Raheleh Salari and S. Cenk Sahinalp. Pair HMM Based Gap Statistics for Re-evaluation of Indels in Alignments with Affine Gap Penalties. In WABI, 2010. link
22.11.2011 Gábor Beke	Samuel C. Flores, Yaqi Wan, Rick Russell, Russ B. Altman. Predicting RNA structure by multiple template homology modeling. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 2010. link
29.11.2011 Pavol Hudec, Robert Mauer	Ali Tofigh, Michael Hallett, Jens Lagergren. Simultaneous Identification of Duplications and Lateral Gene Transfers. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2010. link
6.12.2011 Martin Bobák, Lukáč Litvaj	David C. Hess, Chad L. Myers, Curtis Huttenhower, Matthew A. Hibbs, Alicia P. Hayes, Jadine Paw, John J. Clore, Rosa M. Mendoza, Bryan San Luis, Corey Nislow, Guri Giaever, Michael Costanzo, Olga G. Troyanskaya, Amy A. Caudy. Computationally driven, quantitative experiments discover genes required for mitochondrial biogenesis. PLoS Genet, 2009. link
13.12.2011 Barbora Morávková, Jarka Jančigová	Karin Noy, Fadi Towfic, Gayle M. Wittenberg, Daniel Fasulo. Shape-Based Feature Matching Improves Protein Identification via LC-MS and Tandem MS. Journal of computational biology, 2011. link
20.12.2011 Lukáš Bača, Andrej Kiss	Sushmita Roy, Jason Ernst, Peter V. Kharchenko, et al.. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science, 2010. link
17.1.2012 Martin Macko, Martin Višňovec	Kengo Sato, Yuki Kato, Michiaki Hamada, Tatsuya Akutsu, Kiyoshi Asai. IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming. Bioinformatics, 2011. link
24.1.2012 Mic Nánási	S. Gao, W. K. Sung, N. Nagarajan. Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences. Journal of computational biology : a journal of computational molecular cell biology, 2011. link