2-AIN-505, 2-AIN-251: Seminár z bioinformatiky (1) a (3)
Zima 2012
Rozvrh

Seminár:
Utorok 17:20, I-9
 
Vyučujúci:
Mgr. Tomáš Vinař, PhD M-163,
Konzultačné hodiny: TBA
 
Oznamy:
Prvé stretnutie pre tento semester bude v utorok 25.9. (druhý týždeň semestra). Ak sa plánujete seminára zúčastňovať, ale nemôžete prísť na stretnutie, prosím pošlite mi e-mail, aby sme mohli prispôsobiť organizáciu počtu ľudí.
 
Zoznam prezentácií:
25.9.2012
Kubo Kováč

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Jimmy Yang, Tandy Warnow.
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Fast and accurate methods for phylogenomic analyses.
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BMC bioinformatics,
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2011.
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2.10.2012
Mic Nánási

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Son K. Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler, Pavel A. Pevzner, Max A. Alekseyev.
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Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly.
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Journal of computational biology,
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2012.
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9.10.2012
Martin Králik

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Anthony J. Cox, Tobias Jakobi, Giovanna Rosone, Ole B. Schulz-Trieglaff.
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Comparing DNA Sequence Collections by Direct Comparison of Compressed Text Indexes . In
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WABI 2012,
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2012.
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16.10.2012
Martin Kravec

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Olivier {Tremblay Savard}, Denis Bertrand, Nadia El-Mabrouk.
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Evolution of orthologous tandemly arrayed gene clusters.
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BMC bioinformatics,
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2011.
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23.10.2012
Jaro Budiš

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Steffen Heyne, Fabrizio Costa, Dominic Rose, Rolf Backofen.
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GraphClust: alignment-free structural clustering of local RNA secondarystructures.
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Bioinformatics,
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2012.
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30.10.2012
Matúš Kempa

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Nikolay Vyahhi, Alex Pyshkin, Son Pham, Pavel A. Pevzner.
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From de Bruijn Graphs to Rectangle Graphs for Genome Assembly. In
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WABI 2012,
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2012.
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6.11.2012
Martin Višňovec

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Giltae Song, Cathy Riemer, Benjamin Dickins, Hie Lim Kim, Louxin Zhang, Yu Zhang, Chih-Hao Hsu, Ross C. Hardison, {Nisc Comparative Sequencing Program}, Eric D. Green, Webb Miller.
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Revealing mammalian evolutionary relationships by comparative analysis of gene clusters.
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Genome Biol Evol,
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2012.
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13.11.2012
Iveta Halanova

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Elizabeth P. Murchison et al..
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Genome sequencing and analysis of the Tasmanian devil and its transmissiblecancer.
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Cell,
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2012.
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20.11.2012
Lucia Simanova

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Ilan Gronau, Melissa J. Hubisz, Brad Gulko, Charles G. Danko, Adam Siepel.
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Bayesian inference of ancient human demography from individual genome sequences.
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Nature genetics,
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2011.
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27.11.2012
mimoriadne voľno
4.12.2012
Martin Bobák

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Rene L. Warren, Robert A. Holt.
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Targeted assembly of short sequence reads.
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PLoS One,
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2011.
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11.12.2012
Lukáš Bača

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Thomas A. Hopf, Lucy J. Colwell, Robert Sheridan, Burkhard Rost, Chris Sander, Debora S. Marks.
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Three-dimensional structures of membrane proteins from genomic sequencing.
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Cell,
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2012.
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15.1.2013
Eliška Pätoprstá

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Hosein Mohimani, Wei-Ting Liu, Joshua S. Mylne, Aaron G. Poth, Michelle L. Colgrave, Dat Tran, Michael E. Selsted, Pieter C. Dorrestein, Pavel A. Pevzner.
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Cycloquest: identification of cyclopeptides via database search of their massspectra against genome databases.
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Journal of proteome research,
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2011.
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22.1.2013
Rasťo Pánis

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Webb Miller, Stephan C. Schuster, Andreanna J. Welch, Aakrosh Ratan, Oscar C. Bedoya-Reina, Fangqing Zhao, Hie Lim Kim, Richard C. Burhans, Daniela I. Drautz, Nicola E. Wittekindt, Lynn P. Tomsho, Enrique Ibarra-Laclette, Luis Herrera-Estrella, Elizabeth Peacock, Sean Farley, George K. Sage, Karyn Rode, Martyn Obbard, Rafael Montiel, Lutz Bachmann, Olafur Ingolfsson, Jon Aars, Thomas Mailund, Oystein Wiig, Sandra L. Talbot, Charlotte Lindqvist.
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Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change.
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Proceedings of the National Academy of Sciences of the United States of America,
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2012.
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