2-AIN-505, 2-AIN-251: Seminár z bioinformatiky (1) a (3)
Zima 2014
Rozvrh

Seminár:
Utorok 17:20, M-IX (zmena!)
 
Vyučujúci:
Mgr. Tomáš Vinař, PhD M-163,
 
 
Oznamy:
Prvé stretnutie sa uskutoční 23.9. o 17:20, kde preberieme organizačné detaily a budeme mať aj prvú prezentáciu.
 
Zoznam prezentácií:
23.9.2014
Vlado Boža

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Vladimír Boža, Broňa Brejová, Tomáš Vinař.
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GAML: Genome Assembly by Maximum Likelihood. In
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Algorithms in Bioinformatics, 14th International Workshop (WABI),
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2014.
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link
prezentácia:
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pozri neskôr
30.9.2014
Mio Hozza

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Sante Gnerre, Iain Maccallum, Dariusz Przybylski, Filipe J. Ribeiro, Joshua N. Burton, Bruce J. Walker, Ted Sharpe, Giles Hall, Terrance P. Shea, Sean Sykes, Aaron M. Berlin, Daniel Aird, Maura Costello, Riza Daza, Louise Williams, Robert Nicol, Andreas Gnirke, Chad Nusbaum, Eric S. Lander, David B. Jaffe.
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High-quality draft assemblies of mammalian genomes from massively parallelsequence data.
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Proceedings of the National Academy of Sciences of the United States of America,
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2011.
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link
prezentácia:
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pozri neskôr
7.10.2014
miestnosť nebude = seminár nebude
14.10.2014
Albert Herencsár

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Jared T. Simpson, Richard Durbin.
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Efficient construction of an assembly string graph using the FM-index.
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Bioinformatics,
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2010.
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link
prezentácia:
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pozri neskôr
21.10.2014
Rasťo Hekel

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Viraj Deshpande, Eric DK Fung, Son Pham, Vineet Bafna.
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Cerulean: A hybrid assembly using high throughput short and long reads. In
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WABI 2013,
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2013.
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link
prezentácia:
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pozri neskôr
28.10.2014
Boris Gundzík

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Gene Myers.
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Efficient Local Alignment Discovery amongst Noisy Long Reads. In
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WABI 2014,
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2014.
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link
prezentácia:
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pozri neskôr
4.11.2014
Jano Hozza

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Tobias Marschall, Ivan G. Costa, Stefan Canzar, Markus Bauer, Gunnar W. Klau, Alexander Schliep, Alexander Schonhuth.
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CLEVER: clique-enumerating variant finder.
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Bioinformatics,
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2012.
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link
prezentácia:
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pozri neskôr
11.11.2014
Tomáš Vinař

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Can Alkan, Bradley P. Coe, Evan E. Eichler.
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Genome structural variation discovery and genotyping.
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Nature reviews. Genetics,
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2011.
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link
prezentácia:
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pozri neskôr
18.11.2014
Pavol Lukča

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Yue Jiang, Yadong Wang, Michael Brudno.
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PRISM: pair-read informed split-read mapping for base-pair level detection ofinsertion, deletion and structural variants.
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Bioinformatics,
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2012.
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link
prezentácia:
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pozri neskôr
25.11.2014
Vlado Boža

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Kathrin Trappe, Anne-Katrin Emde, Hans-Christian Ehrlich, Knut Reinert.
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Gustaf: Detecting and correctly classifying SVs in the NGS twilight zone.
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Bioinformatics,
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2014.
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link
prezentácia:
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pozri neskôr
2.12.2014
Peter Kuban

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Yu Lin, Fei Hu, Jijun Tang, Bernard M. E. Moret.
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Maximum likelihood phylogenetic reconstruction from high-resolution whole-genome data and a tree of 68 eukaryotes.
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Pacific Symposium on Biocomputing,
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2013.
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link
prezentácia:
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pozri neskôr
9.12.2014
Mio Hozza

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Manuel Lafond, Krister M. Swenson, Nadia El-Mabrouk.
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An Optimal Reconciliation Algorithm for Gene Trees with Polytomies. In
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RECOMB 2012,
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2012.
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link
prezentácia:
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pozri neskôr
16.12.2014
Albert Herencsár

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Phillip E. C. Compeau.
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A Generalized Cost Model for DCJ-Indel Sorting.
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2014.
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link
prezentácia:
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pozri neskôr