2-AIN-506 a 2-AIN-252: Seminár z bioinformatiky (2) a (4)
Leto 2015
Rozvrh

Seminár:
Utorok 17:20, M-I
 
Vyučujúci:
Mgr. Tomáš Vinař, PhD M-163,
 
 
doc. Mgr. Broňa Brejová, PhD M-163,
 
 
Oznamy:
Prvé stretnutie sa uskutoční 17.2. o 17:20, kde preberieme organizačné detaily a budeme mať aj prvú prezentáciu.
 
Zoznam prezentácií:
17.2.2015
Broňa Brejová

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Najeeb Halabi, Olivier Rivoire, Stanislas Leibler, Rama Ranganathan.
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Protein sectors: evolutionary units of three-dimensional structure.
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Cell,
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2009.
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link
prezentácia:
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pozri neskôr
24.2.2015
Mio Hozza

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Qingpeng Zhang, Jason Pell, Rosangela Canino-Koning, Adina Chuang Howe, C. Titus Brown.
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These are not the k-mers you are looking for: efficient online k-mer countingusing a probabilistic data structure.
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PLoS One,
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2014.
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link
prezentácia:
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pozri neskôr
3.3.2015
Vlado Boža

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Leena Salmela, Eric Rivals.
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LoRDEC: accurate and efficient long read error correction.
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Bioinformatics,
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2014.
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link
prezentácia:
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pozri neskôr
10.3.2015
seminár nebude
17.3.2015
Albert Herencsár

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Derrick E. Wood, Steven L. Salzberg.
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Kraken: ultrafast metagenomic sequence classification using exact alignments.
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Genome biology,
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2014.
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link
prezentácia:
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pozri neskôr
24.3.2015
seminár nebude
31.3.2015
Pavol Lukča

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Beth L. Dumont, Evan E. Eichler.
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Signals of historical interlocus gene conversion in human segmental duplications.
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PLoS One,
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2013.
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link
prezentácia:
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pozri neskôr
7.4.2015
Veľkonočný utorok, seminár nebude
14.4.2015
konferencia RECOMB, seminár nebude
21.4.2015
Michal Valíček

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John Huddleston, Swati Ranade, Maika Malig, Francesca Antonacci, Mark Chaisson, Lawrence Hon, Peter H. Sudmant, Tina A. Graves, Can Alkan, Megan Y. Dennis, Richard K. Wilson, Stephen W. Turner, Jonas Korlach, Evan E. Eichler.
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Reconstructing complex regions of genomes using long-read sequencing technology.
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Genome research,
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2014.
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link
prezentácia:
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pozri neskôr
28.4.2015
Dávid Simeunovič

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Stephen B. Montgomery, David L. Goode, Erika Kvikstad, Cornelis A. Albers, Zhengdong D. Zhang, Xinmeng Jasmine Mu, Guruprasad Ananda, Bryan Howie, Konrad J. Karczewski, Kevin S. Smith, Vanessa Anaya, Rhea Richardson, Joe Davis, Daniel G. MacArthur, Arend Sidow, Laurent Duret, Mark Gerstein, Kateryna D. Makova, Jonathan Marchini, Gil McVean, Gerton Lunter.
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The origin, evolution, and functional impact of short insertion-deletion variantsidentified in 179 human genomes.
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Genome research,
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2013.
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link
prezentácia:
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pozri neskôr
5.5.2015
12.5.2015
19.5.2015