2-AIN-506, 2-AIN-252: Seminar in Bioinformatics (2), (4)
Summer 2026
List of papers
- Karina Ilchenko, Remy A. Bonnin, Eduardo P. C. Rocha, Eugen Pfeifer.
Efficient detection and typing of phage-plasmids.
mBio,
:e0300025.
2026.
[ Abstract ] [ Download from publisher ] [ BibTeX ] [ PubMed ]
- Sergio Arredondo-Alonso, Anna K. Pontinen, Joao A. Gama, Rebecca A. Gladstone, Klaus Harms, Gerry Tonkin-Hill, Harry A. Thorpe, Gunnar S. Simonsen, Orjan Samuelsen, Pal J. Johnsen, Jukka Corander.
Plasmid-driven strategies for clone success in Escherichia coli.
Nat Commun,
16(1):2921.
2025.
[ Abstract ] [ Download from publisher ] [ BibTeX ] [ PubMed ]
- Pedro Tomaz da Silva, Alexander Karollus, Johannes Hingerl, Gihanna Sta Teresa Galindez, Nils Wagner, Xavier Hernandez-Alias, Danny Incarnato, Julien Gagneur.
Nucleotide dependency analysis of genomic language models detects functional elements.
Nature genetics,
57(10):2589-2602.
2025.
[ Abstract ] [ Download from publisher ] [ BibTeX ] [ PubMed ]
- James Robertson, Kyrylo Bessonov, Justin Schonfeld, John H. E. Nash.
Universal whole-sequence-based plasmid typing and its utility to prediction of host range and epidemiological surveillance.
Microb Genom,
6(10).
2020.
[ Abstract ] [ Download from publisher ] [ BibTeX ] [ PubMed ]
- James Robertson, John H. E. Nash.
MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies.
Microb Genom,
4(8).
2018.
[ Abstract ] [ Download from publisher ] [ BibTeX ] [ PubMed ]
