@article{Brejova2007,
 author={Brona Brejova and  Daniel G. Brown and  Tomas Vinar},
 title={{The most probable annotation problem in HMMs and its application to bioinformatics}},
 journal={Journal of Computer and System Sciences},
 volume={73},
 number={7},
 pages={1060--1077},
 year={2007},
 note={Early version in WABI 2004}
}