/home/tvinar/exonhunter/bin/writegccont /home/tvinar/exonhunter/bin/../param/plasmodium/train.gc >>/home/tvinar/exonhunter/bin/../param/plasmodium/model.tab
****** signal/stop *******
/home/tvinar/exonhunter/bin/train_signal /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.seq /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.fasta /home/tvinar/exonhunter/bin/../param/plasmodium/train.gc /home/tvinar/exonhunter/bin/../param/plasmodium/train.signals stop b /home/tvinar/exonhunter/bin/../param/plasmodium/signals/signal-stop
MAL7-25673
>MAL7-25673*MAL7-25673*
MAL11-848
>MAL11-848*MAL11-848*
MAL11-1997460
>MAL11-1997460*MAL11-1997460*
MAL4-30153
>MAL4-30153*MAL4-30153*
MAL2-20232
>MAL2-20232*MAL2-20232*
MAL9-1
>MAL9-1*MAL9-1*
MAL13-16467
>MAL13-16467*MAL13-16467*
MAL13-2016467
>MAL13-2016467*MAL13-2016467*
MAL10-23491
>MAL10-23491*MAL10-23491*
MAL3-3394
>MAL3-3394*MAL3-3394*
MAL5-15929
>MAL5-15929*MAL5-15929*
MAL8-4315
>MAL8-4315*MAL8-4315*
MAL12-11973
>MAL12-11973*MAL12-11973*
MAL12-1993761
>MAL12-1993761*MAL12-1993761*
MAL1-24733
>MAL1-24733*MAL1-24733*
MAL14-2209
>MAL14-2209*MAL14-2209*
MAL14-1978274
>MAL14-1978274*MAL14-1978274*
MAL6-1
>MAL6-1*MAL6-1*
****** signal/pre-acceptor *******
/home/tvinar/exonhunter/bin/train_signal /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.seq /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.fasta /home/tvinar/exonhunter/bin/../param/plasmodium/train.gc /home/tvinar/exonhunter/bin/../param/plasmodium/train.signals pre-acceptor b /home/tvinar/exonhunter/bin/../param/plasmodium/signals/signal-pre-acceptor
MAL7-25673
>MAL7-25673*MAL7-25673*
MAL11-848
>MAL11-848*MAL11-848*
MAL11-1997460
>MAL11-1997460*MAL11-1997460*
MAL4-30153
>MAL4-30153*MAL4-30153*
MAL2-20232
>MAL2-20232*MAL2-20232*
MAL9-1
>MAL9-1*MAL9-1*
MAL13-16467
>MAL13-16467*MAL13-16467*
MAL13-2016467
>MAL13-2016467*MAL13-2016467*
MAL10-23491
>MAL10-23491*MAL10-23491*
MAL3-3394
>MAL3-3394*MAL3-3394*
MAL5-15929
>MAL5-15929*MAL5-15929*
MAL8-4315
>MAL8-4315*MAL8-4315*
MAL12-11973
>MAL12-11973*MAL12-11973*
MAL12-1993761
>MAL12-1993761*MAL12-1993761*
MAL1-24733
>MAL1-24733*MAL1-24733*
MAL14-2209
>MAL14-2209*MAL14-2209*
MAL14-1978274
>MAL14-1978274*MAL14-1978274*
MAL6-1
>MAL6-1*MAL6-1*
****** signal/acceptor *******
/home/tvinar/exonhunter/bin/train_signal /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.seq /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.fasta /home/tvinar/exonhunter/bin/../param/plasmodium/train.gc /home/tvinar/exonhunter/bin/../param/plasmodium/train.signals acceptor b /home/tvinar/exonhunter/bin/../param/plasmodium/signals/signal-acceptor
MAL7-25673
>MAL7-25673*MAL7-25673*
Fire! TTAAAAT
MAL11-848
>MAL11-848*MAL11-848*
Fire! ACTAGAT
MAL11-1997460
>MAL11-1997460*MAL11-1997460*
MAL4-30153
>MAL4-30153*MAL4-30153*
MAL2-20232
>MAL2-20232*MAL2-20232*
MAL9-1
>MAL9-1*MAL9-1*
MAL13-16467
>MAL13-16467*MAL13-16467*
Fire! GTGATAT
Fire! TTAATTT
MAL13-2016467
>MAL13-2016467*MAL13-2016467*
Fire! GTAATGG
MAL10-23491
>MAL10-23491*MAL10-23491*
Fire! TGAAGAT
MAL3-3394
>MAL3-3394*MAL3-3394*
MAL5-15929
>MAL5-15929*MAL5-15929*
Fire! GAGGATC
MAL8-4315
>MAL8-4315*MAL8-4315*
Fire! CGCAGTT
MAL12-11973
>MAL12-11973*MAL12-11973*
Fire! TAGAGAC
MAL12-1993761
>MAL12-1993761*MAL12-1993761*
MAL1-24733
>MAL1-24733*MAL1-24733*
MAL14-2209
>MAL14-2209*MAL14-2209*
MAL14-1978274
>MAL14-1978274*MAL14-1978274*
MAL6-1
>MAL6-1*MAL6-1*
****** signal/start *******
/home/tvinar/exonhunter/bin/train_signal /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.seq /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.fasta /home/tvinar/exonhunter/bin/../param/plasmodium/train.gc /home/tvinar/exonhunter/bin/../param/plasmodium/train.signals start b /home/tvinar/exonhunter/bin/../param/plasmodium/signals/signal-start
MAL7-25673
>MAL7-25673*MAL7-25673*
MAL11-848
>MAL11-848*MAL11-848*
MAL11-1997460
>MAL11-1997460*MAL11-1997460*
MAL4-30153
>MAL4-30153*MAL4-30153*
MAL2-20232
>MAL2-20232*MAL2-20232*
MAL9-1
>MAL9-1*MAL9-1*
MAL13-16467
>MAL13-16467*MAL13-16467*
MAL13-2016467
>MAL13-2016467*MAL13-2016467*
MAL10-23491
>MAL10-23491*MAL10-23491*
MAL3-3394
>MAL3-3394*MAL3-3394*
MAL5-15929
>MAL5-15929*MAL5-15929*
MAL8-4315
>MAL8-4315*MAL8-4315*
MAL12-11973
>MAL12-11973*MAL12-11973*
MAL12-1993761
>MAL12-1993761*MAL12-1993761*
MAL1-24733
>MAL1-24733*MAL1-24733*
MAL14-2209
>MAL14-2209*MAL14-2209*
MAL14-1978274
>MAL14-1978274*MAL14-1978274*
MAL6-1
>MAL6-1*MAL6-1*
****** signal/signal-peptide *******
/home/tvinar/exonhunter/bin/train_signal /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.seq /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.fasta /home/tvinar/exonhunter/bin/../param/plasmodium/train.gc /home/tvinar/exonhunter/bin/../param/plasmodium/train.signals signal-peptide b /home/tvinar/exonhunter/bin/../param/plasmodium/signals/signal-signal-peptide
MAL7-25673
>MAL7-25673*MAL7-25673*
MAL11-848
>MAL11-848*MAL11-848*
MAL11-1997460
>MAL11-1997460*MAL11-1997460*
MAL4-30153
>MAL4-30153*MAL4-30153*
MAL2-20232
>MAL2-20232*MAL2-20232*
MAL9-1
>MAL9-1*MAL9-1*
MAL13-16467
>MAL13-16467*MAL13-16467*
MAL13-2016467
>MAL13-2016467*MAL13-2016467*
MAL10-23491
>MAL10-23491*MAL10-23491*
MAL3-3394
>MAL3-3394*MAL3-3394*
MAL5-15929
>MAL5-15929*MAL5-15929*
MAL8-4315
>MAL8-4315*MAL8-4315*
MAL12-11973
>MAL12-11973*MAL12-11973*
MAL12-1993761
>MAL12-1993761*MAL12-1993761*
MAL1-24733
>MAL1-24733*MAL1-24733*
MAL14-2209
>MAL14-2209*MAL14-2209*
MAL14-1978274
>MAL14-1978274*MAL14-1978274*
MAL6-1
>MAL6-1*MAL6-1*
****** signal/donor *******
/home/tvinar/exonhunter/bin/train_signal /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.seq /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.fasta /home/tvinar/exonhunter/bin/../param/plasmodium/train.gc /home/tvinar/exonhunter/bin/../param/plasmodium/train.signals donor b /home/tvinar/exonhunter/bin/../param/plasmodium/signals/signal-donor
MAL7-25673
>MAL7-25673*MAL7-25673*
Fire! ATGTATAAT
Fire! ATAAATATA
MAL11-848
>MAL11-848*MAL11-848*
Fire! TTGAATTAA
Fire! GAATTAATG
Fire! TAATAGAAT
MAL11-1997460
>MAL11-1997460*MAL11-1997460*
MAL4-30153
>MAL4-30153*MAL4-30153*
MAL2-20232
>MAL2-20232*MAL2-20232*
Fire! AAAAGTTAA
MAL9-1
>MAL9-1*MAL9-1*
Fire! TTAAATTCC
MAL13-16467
>MAL13-16467*MAL13-16467*
Fire! AGAGGGAAA
MAL13-2016467
>MAL13-2016467*MAL13-2016467*
Fire! CACTTACAC
MAL10-23491
>MAL10-23491*MAL10-23491*
MAL3-3394
>MAL3-3394*MAL3-3394*
Fire! GAATTTATA
MAL5-15929
>MAL5-15929*MAL5-15929*
MAL8-4315
>MAL8-4315*MAL8-4315*
Fire! TGGTGCTGC
Fire! AAATAAAAA
MAL12-11973
>MAL12-11973*MAL12-11973*
MAL12-1993761
>MAL12-1993761*MAL12-1993761*
MAL1-24733
>MAL1-24733*MAL1-24733*
MAL14-2209
>MAL14-2209*MAL14-2209*
Fire! ATAATTTTC
MAL14-1978274
>MAL14-1978274*MAL14-1978274*
MAL6-1
>MAL6-1*MAL6-1*
Fire! GGGGAGTAA
>>>Running intronlen -g a -g b -g c
/home/tvinar/exonhunter/bin/intronlen -g a -g b -g c /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.seq /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.fasta /home/tvinar/exonhunter/bin/../param/plasmodium/train.gc 2>/dev/null
/home/tvinar/exonhunter/bin/fitlength -t 200 -s 20 -m 20 -x 800 -y 0.015 /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_intron-a.tmp
>>>writing d2_intron a
jgraph /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_intron-a.tmp.jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_intron-a.ps
/home/tvinar/exonhunter/bin/fitlength -t 200 -s 20 -m 20 -x 800 -y 0.015 /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_intron-b.tmp
>>>writing d2_intron b
jgraph /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_intron-b.tmp.jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_intron-b.ps
/home/tvinar/exonhunter/bin/fitlength -t 200 -s 20 -m 20 -x 800 -y 0.015 /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_intron-c.tmp
>>>writing d2_intron c
jgraph /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_intron-c.tmp.jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_intron-c.ps
>>>Running exonlen -g a -g b -g c  -s ilf
/home/tvinar/exonhunter/bin/exonlen -g a -g b -g c  -s ilf /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.seq /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.fasta /home/tvinar/exonhunter/bin/../param/plasmodium/train.gc 2>/dev/null
/home/tvinar/exonhunter/bin/fitlength -o L -j Lom -c 8 -t 120 -s 30 -m 20 -x 500 -y 0.01 /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_internal-a.tmp
>>>writing d_e_internal a
jgraph /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_internal-a.tmp.jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_internal-a.ps
/home/tvinar/exonhunter/bin/fitlength -o L -j Lom -c 20 -t 90 -s 30 -m 20 -x 500 -y 0.01 /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_start-a.tmp
>>>writing d_e_start a
jgraph /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_start-a.tmp.jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_start-a.ps
/home/tvinar/exonhunter/bin/fitlength -o L -j Lom -c 15 -t 30 -s 10 -m 7 -x 167 -d 3 -y 0.025 /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_e_start-a.tmp
>>>writing d2_e_start a
jgraph /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_e_start-a.tmp.jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_e_start-a.ps
/home/tvinar/exonhunter/bin/fitlength -o L -j Lom -c 30 -t 290 -s 50 -m 20 -x 750 -y 0.01 /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_stop-a.tmp
>>>writing d_e_stop a
jgraph /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_stop-a.tmp.jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_stop-a.ps
/home/tvinar/exonhunter/bin/fitlength -o L -j Lom -c 15 -t 98 -s 16 -m 7 -x 233 -d 3 -y 0.025 /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_e_stop-a.tmp
>>>writing d2_e_stop a
jgraph /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_e_stop-a.tmp.jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_e_stop-a.ps
/home/tvinar/exonhunter/bin/fitlength -o L -j Lom -c 8 -t 120 -s 30 -m 20 -x 500 -y 0.01 /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_internal-b.tmp
>>>writing d_e_internal b
jgraph /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_internal-b.tmp.jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_internal-b.ps
/home/tvinar/exonhunter/bin/fitlength -o L -j Lom -c 20 -t 90 -s 30 -m 20 -x 500 -y 0.01 /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_start-b.tmp
>>>writing d_e_start b
jgraph /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_start-b.tmp.jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_start-b.ps
/home/tvinar/exonhunter/bin/fitlength -o L -j Lom -c 15 -t 30 -s 10 -m 7 -x 167 -d 3 -y 0.025 /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_e_start-b.tmp
>>>writing d2_e_start b
jgraph /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_e_start-b.tmp.jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_e_start-b.ps
/home/tvinar/exonhunter/bin/fitlength -o L -j Lom -c 30 -t 290 -s 50 -m 20 -x 750 -y 0.01 /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_stop-b.tmp
>>>writing d_e_stop b
jgraph /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_stop-b.tmp.jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_stop-b.ps
/home/tvinar/exonhunter/bin/fitlength -o L -j Lom -c 15 -t 98 -s 16 -m 7 -x 233 -d 3 -y 0.025 /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_e_stop-b.tmp
>>>writing d2_e_stop b
jgraph /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_e_stop-b.tmp.jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_e_stop-b.ps
/home/tvinar/exonhunter/bin/fitlength -o L -j Lom -c 8 -t 120 -s 30 -m 20 -x 500 -y 0.01 /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_internal-c.tmp
>>>writing d_e_internal c
jgraph /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_internal-c.tmp.jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_internal-c.ps
/home/tvinar/exonhunter/bin/fitlength -o L -j Lom -c 20 -t 90 -s 30 -m 20 -x 500 -y 0.01 /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_start-c.tmp
>>>writing d_e_start c
jgraph /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_start-c.tmp.jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_start-c.ps
/home/tvinar/exonhunter/bin/fitlength -o L -j Lom -c 15 -t 30 -s 10 -m 7 -x 167 -d 3 -y 0.025 /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_e_start-c.tmp
>>>writing d2_e_start c
jgraph /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_e_start-c.tmp.jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_e_start-c.ps
/home/tvinar/exonhunter/bin/fitlength -o L -j Lom -c 30 -t 290 -s 50 -m 20 -x 750 -y 0.01 /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_stop-c.tmp
>>>writing d_e_stop c
jgraph /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_stop-c.tmp.jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_stop-c.ps
/home/tvinar/exonhunter/bin/fitlength -o L -j Lom -c 15 -t 98 -s 16 -m 7 -x 233 -d 3 -y 0.025 /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_e_stop-c.tmp
>>>writing d2_e_stop c
jgraph /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_e_stop-c.tmp.jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_e_stop-c.ps
>>>Running exonlen -g abc -s o
/home/tvinar/exonhunter/bin/exonlen -g abc -s o /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.seq /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.fasta /home/tvinar/exonhunter/bin/../param/plasmodium/train.gc 2>/dev/null
/home/tvinar/exonhunter/bin/fitlength -o L -j Lom -m 30 -s 100 -t 370 -c 10 -x 1000 -y 0.005 /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_single-abc.tmp
>>>writing d_e_single a b c
jgraph /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_single-abc.tmp.jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d_e_single-abc.ps
/home/tvinar/exonhunter/bin/fitlength -o L -j Lom -c 5 -t 140 -s 33 -m 10 -x 333 -d 3 -y 0.01 /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_e_single-abc.tmp
>>>writing d2_e_single a b c
jgraph /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_e_single-abc.tmp.jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_e_single-abc.ps
>>>Running intergeniclen -g a -g b -g c
/home/tvinar/exonhunter/bin/intergeniclen -g a -g b -g c /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.seq /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.fasta /home/tvinar/exonhunter/bin/../param/plasmodium/train.gc 2>/dev/null
/home/tvinar/exonhunter/bin/fitlength -o L -j Log -t 100 -d 50 -s 20 -c 10 -x 250 -y 0.05 /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_intergenic-a.tmp
>>>writing d2_intergenic a
jgraph /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_intergenic-a.tmp.jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_intergenic-a.ps
/home/tvinar/exonhunter/bin/fitlength -o L -j Log -t 100 -d 50 -s 20 -c 10 -x 250 -y 0.05 /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_intergenic-b.tmp
>>>writing d2_intergenic b
jgraph /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_intergenic-b.tmp.jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_intergenic-b.ps
/home/tvinar/exonhunter/bin/fitlength -o L -j Log -t 100 -d 50 -s 20 -c 10 -x 250 -y 0.05 /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_intergenic-c.tmp
>>>writing d2_intergenic c
jgraph /home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_intergenic-c.tmp.jgraph >/home/tvinar/exonhunter/bin/../param/plasmodium/length-tmp/d2_intergenic-c.ps
>>>Running nexons -g a -g b -g c
/home/tvinar/exonhunter/bin/nexons -g a -g b -g c /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.seq /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.fasta /home/tvinar/exonhunter/bin/../param/plasmodium/train.gc 2>/dev/null
>>>Running CODONSTAT
/home/tvinar/exonhunter/bin/codonstat /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.seq /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.fasta /home/tvinar/exonhunter/bin/../param/plasmodium/train.gc >>/home/tvinar/exonhunter/bin/../param/plasmodium/model.tab 2>/dev/null
>>>Running NUCLSTAT
/home/tvinar/exonhunter/bin/nuclstat /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.seq /home/tvinar/exonhunter/bin/../param/plasmodium/tmp_5296.fasta  /home/tvinar/exonhunter/bin/../param/plasmodium/train.gc >>/home/tvinar/exonhunter/bin/../param/plasmodium/model.tab 2>/dev/null
/home/tvinar/exonhunter/bin/genhmm.pl -3 -5 -s /home/tvinar/exonhunter/bin/../param/plasmodium/train.param >/home/tvinar/exonhunter/bin/../param/plasmodium/model.hmm
DONE Wed Jan 17 17:09:19 2007
