Journal club papers: Rozdiel medzi revíziami
Z MBI
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A detailed description of the journal club activity is included in the [[Rules#Journal club|course rules]]. | A detailed description of the journal club activity is included in the [[Rules#Journal club|course rules]]. | ||
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Please submit your preferences regarding these papers using '''[https://forms.gle/K7BZJD5fA3wRmmXk8 this form]''' until Wednesday '''19.10.2022, 22:00'''. In the form, include '''numbers of three papers from this list''' in the order of preference. | Please submit your preferences regarding these papers using '''[https://forms.gle/K7BZJD5fA3wRmmXk8 this form]''' until Wednesday '''19.10.2022, 22:00'''. In the form, include '''numbers of three papers from this list''' in the order of preference. | ||
* Students from the same study program will typically not be in the same group. | * Students from the same study program will typically not be in the same group. | ||
* Preferences submitted earlier will be considered with higher preference. | * Preferences submitted earlier will be considered with higher preference. | ||
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| − | + | * 3 Wahba L, Jain N, Fire AZ, Shoura MJ, Artiles KL, McCoy MJ, Jeong DE. An extensive meta-metagenomic search identifies SARS-CoV-2-homologous sequences in pangolin lung viromes. MSphere. 2020 May 6;5(3):e00160-20. [https://journals.asm.org/doi/full/10.1128/mSphere.00160-20] | |
| − | + | * 4 Zhang S, Amahong K, Zhang C, Li F, Gao J, Qiu Y, Zhu F. RNA–RNA interactions between SARS-CoV-2 and host benefit viral development and evolution during COVID-19 infection. Briefings in Bioinformatics. 2021 Sep 28. [https://academic.oup.com/bib/advance-article/doi/10.1093/bib/bbab397/6377518] | |
| − | + | * 5 Korber, B., Fischer, W.M., Gnanakaran, S., Yoon, H., Theiler, J., Abfalterer, W., Hengartner, N., Giorgi, E.E., Bhattacharya, T., Foley, B. and Hastie, K.M., 2020. Tracking changes in SARS-CoV-2 Spike: evidence that D614G increases infectivity of the COVID-19 virus. Cell. [https://www.sciencedirect.com/science/article/pii/S0092867420308205] (comment on the paper from different authors [https://www.sciencedirect.com/science/article/pii/S0092867420308175]) | |
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| − | + | ==Unused papers== | |
| + | * 1 Lemey P, Hong SL, Hill V, Baele G, Poletto C, Colizza V, O’toole Á, McCrone JT, Andersen KG, Worobey M, Nelson MI. Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2. Nature communications. 2020 Oct 9;11(1):1-4. [https://www.nature.com/articles/s41467-020-18877-9] | ||
| + | * 2 Quick J, Grubaugh ND, Pullan ST, Claro IM, Smith AD, Gangavarapu K, Oliveira G, Robles-Sikisaka R, Rogers TF, Beutler NA, Burton DR. Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples. Nature protocols. 2017 Jun;12(6):1261. [https://www.nature.com/articles/nprot.2017.066] or [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5902022/] (application to SARS-CoV-2 [https://artic.network/ncov-2019]) | ||
| + | * 6 Gordon DE, Hiatt J, Bouhaddou M, Rezelj VV, Ulferts S, Braberg H, Jureka AS, Obernier K, Guo JZ, Batra J, Kaake RM. Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. Science. 2020 Dec 4;370(6521). [https://science.sciencemag.org/content/370/6521/eabe9403.abstract] | ||
Verzia zo dňa a času 08:20, 20. október 2022
A detailed description of the journal club activity is included in the course rules.
- 3 Wahba L, Jain N, Fire AZ, Shoura MJ, Artiles KL, McCoy MJ, Jeong DE. An extensive meta-metagenomic search identifies SARS-CoV-2-homologous sequences in pangolin lung viromes. MSphere. 2020 May 6;5(3):e00160-20. [1]
- 4 Zhang S, Amahong K, Zhang C, Li F, Gao J, Qiu Y, Zhu F. RNA–RNA interactions between SARS-CoV-2 and host benefit viral development and evolution during COVID-19 infection. Briefings in Bioinformatics. 2021 Sep 28. [2]
- 5 Korber, B., Fischer, W.M., Gnanakaran, S., Yoon, H., Theiler, J., Abfalterer, W., Hengartner, N., Giorgi, E.E., Bhattacharya, T., Foley, B. and Hastie, K.M., 2020. Tracking changes in SARS-CoV-2 Spike: evidence that D614G increases infectivity of the COVID-19 virus. Cell. [3] (comment on the paper from different authors [4])
Unused papers
- 1 Lemey P, Hong SL, Hill V, Baele G, Poletto C, Colizza V, O’toole Á, McCrone JT, Andersen KG, Worobey M, Nelson MI. Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2. Nature communications. 2020 Oct 9;11(1):1-4. [5]
- 2 Quick J, Grubaugh ND, Pullan ST, Claro IM, Smith AD, Gangavarapu K, Oliveira G, Robles-Sikisaka R, Rogers TF, Beutler NA, Burton DR. Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples. Nature protocols. 2017 Jun;12(6):1261. [6] or [7] (application to SARS-CoV-2 [8])
- 6 Gordon DE, Hiatt J, Bouhaddou M, Rezelj VV, Ulferts S, Braberg H, Jureka AS, Obernier K, Guo JZ, Batra J, Kaake RM. Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. Science. 2020 Dec 4;370(6521). [9]
