C. L. Kahn, S. Mozes, B. J. Raphael.
Efficient algorithms for analyzing segmental duplications with deletions and inversions in genomes.
Algorithms Mol Biol,
5(1):11.
2010.
[ Abstract ] [ BibTeX ] [ PubMed ]
F. Zhao, J. Peng, J. Debartolo, K. F. Freed, T. R. Sosnick, J. Xu.
A Probabilistic Graphical Model for Ab Initio Folding.
In RECOMB,
5541 volume of Lecture Notes in Computer Science,
pp. 59-73, 2009.
[ Abstract ] [ Download from publisher ] [ BibTeX ] [ PubMed ]
Jeremy R. Sanford, Xin Wang, Matthew Mort, Natalia Vanduyn, David N. Cooper, Sean D. Mooney, Howard J. Edenberg, Yunlong Liu.
Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts.
Genome research,
19(3):381-384.
2009.
[ Abstract ] [ BibTeX ] [ PubMed ]
Hussein Hirjee, Daniel G. Brown.
From DNA to Jay-Z: how ideas from bioinformatics can automate finding rhymes in rap music.
Zodpovedajúci článok bol publikovaný na konferencii ISMIR 2009,
2009.
[ Abstract ] [ Download from publisher ] [ BibTeX ]
John Hawkins, Charles Grant, William Stafford Noble, Timothy L. Bailey.
Assessing phylogenetic motif models for predicting transcription factor binding sites.
Bioinformatics,
25(12):i339-347.
2009.
[ Abstract ] [ BibTeX ] [ PubMed ]
Mikhail Zaslavskiy, Francis Bach, Jean-Philippe Vert.
Global alignment of protein-protein interaction networks by graph matching methods.
Bioinformatics,
25(12):i259-267.
2009.
[ Abstract ] [ BibTeX ] [ PubMed ]
Minmei Hou, Cathy Riemer, Piotr Berman, Ross Hardison, Webb Miller.
Aligning two genomic sequences that contain duplications .
In RECOMB-CG,
Lecture Notes in Bioinformatics,
2009. Springer.
Accepted, available after Oct 5.
[ Abstract ] [ BibTeX ]
Tara A. Gianoulis, Jeroen Raes, Prianka V. Patel, Robert Bjornson, Jan O. Korbel, Ivica Letunic, Takuji Yamada, Alberto Paccanaro, Lars J. Jensen, Michael Snyder, Peer Bork, Mark B. Gerstein.
Quantifying environmental adaptation of metabolic pathways in metagenomics.
Proceedings of the National Academy of Sciences of the United States of America,
106(5):1374-1379.
2009.
[ Abstract ] [ Download from publisher ] [ BibTeX ] [ PubMed ]
Michael F. Lin, Ameya N. Deoras, Matthew D. Rasmussen, Manolis Kellis.
Performance and scalability of discriminative metrics for comparative gene identification in 12 Drosophila genomes.
PLoS Computanional Biology,
4(4):e1000067.
2008.
[ Abstract ] [ Download from publisher ] [ BibTeX ] [ PubMed ]
Benedict Paten, Javier Herrero, Stephen Fitzgerald, Kathryn Beal, Paul Flicek, Ian Holmes, Ewan Birney.
Genome-wide nucleotide-level mammalian ancestor reconstruction.
Genome research,
18(11):1829-1833.
2008.
[ Abstract ] [ BibTeX ] [ PubMed ]
Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler.
Using native and syntenically mapped cDNA alignments to improve de novo gene finding.
Bioinformatics,
24(5):637-644.
2008.
[ Abstract ] [ BibTeX ] [ PubMed ]
Anthony P. Fejes, Gordon Robertson, Mikhail Bilenky, Richard Varhol, Matthew Bainbridge, Steven J. M. Jones.
FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology.
Bioinformatics,
24(15):1729-1730.
2008.
[ Abstract ] [ BibTeX ] [ PubMed ]
Heng Li, Jue Ruan, Richard Durbin.
Mapping short DNA sequencing reads and calling variants using mapping quality scores.
Genome research,
18(11):1851-1858.
2008.
[ Abstract ] [ BibTeX ] [ PubMed ]
Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler.
Using native and syntenically mapped cDNA alignments to improve de novo gene finding.
Bioinformatics,
24(5):637-644.
2008.
[ Abstract ] [ Download from publisher ] [ BibTeX ] [ PubMed ]
Vidushi S. Patel, Steven J. B. Cooper, Janine E. Deakin, Bob Fulton, Tina Graves, Wesley C. Warren, Richard K. Wilson, Jennifer A. M. Graves.
Platypus globin genes and flanking loci suggest a new insertional model for beta-globin evolution in birds and mammals.
BMC biology,
6:34.
2008.
[ Abstract ] [ Download from publisher ] [ BibTeX ] [ PubMed ]
Ian Barnes, Beth Shapiro, Adrian Lister, Tatiana Kuznetsova, Andrei Sher, Dale Guthrie, Mark G. Thomas.
Genetic structure and extinction of the woolly mammoth, Mammuthus primigenius.
Current biology : CB,
17(12):1072-1075.
2007.
[ Abstract ] [ Download from publisher ] [ BibTeX ] [ PubMed ]