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2-AIN-506 a 2-AIN-252: Seminár z bioinformatiky (2) a (4)
Leto 2013
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  • John Kececioglu, Dan Deblasio. Accuracy estimation and parameter advising for protein multiple sequencealignment. Journal of computational biology : a journal of computational molecular cell biology, 20(4):259-259. 2013.
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  • Michael I. Sadowski. Prediction of protein domain boundaries from inverse covariances. Proteins, 81(2):253-260. 2013.
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  • Armin Topfer, Osvaldo Zagordi, Sandhya Prabhakaran, Volker Roth, Eran Halperin, Niko Beerenwinkel. Probabilistic inference of viral quasispecies subject to recombination. Journal of computational biology : a journal of computational molecular cell biology, 20(2):113-113. 2013.
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  • Andy C. W. Lai, Alex N. {Nguyen Ba}, Alan M. Moses. Predicting kinase substrates using conservation of local motif density. Bioinformatics, 28(7):962-969. 2012.
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  • Michael S. Breen, Carsten Kemena, Peter K. Vlasov, Cedric Notredame, Fyodor A. Kondrashov. Epistasis as the primary factor in molecular evolution. Nature, 490(7421):535-538. 2012.
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  • Philippe Rinaudo, Yann Ponty, Dominique Barth, Alain Denise. Tree Decomposition and Parameterized Algorithms for RNA Structure-Sequence Alignment Including Tertiary Interactions and Pseudoknots. In WABI 2012, pp. 149-164, 2012.
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  • Heng Li, Richard Durbin. Inference of human population history from individual whole-genome sequences. Nature, 475(7357):493-496. 2011.
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  • Hai Yang Hu, Liu He, Kseniya Fominykh, Zheng Yan, Song Guo, Xiaoyu Zhang, Martin S. Taylor, Lin Tang, Jie Li, Jianmei Liu, Wen Wang, Haijing Yu, Philipp Khaitovich. Evolution of the human-specific microRNA miR-941. Nat Commun, 3:1145. 2012.
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  • Kevin Y. Yip, Chao Cheng, Nitin Bhardwaj, James B. Brown, Jing Leng, Anshul Kundaje, Joel Rozowsky, Ewan Birney, Peter Bickel, Michael Snyder, Mark Gerstein. Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors. Genome biology, 13(9):R48. 2012.
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  • Luqman Hodgkinson, Richard M. Karp. Algorithms to detect multiprotein modularity conserved during evolution. IEEE/ACM Trans Comput Biol Bioinform, 9(4):1046-1048. 2012.
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  • Yu Lin, Vaibhav Rajan, Bernard M. E. Moret. Bootstrapping phylogenies inferred from rearrangement data. Algorithms Mol Biol, 7(1):21. 2012.
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  • Pierre Peterlongo, Rayan Chikhi. Mapsembler, targeted and micro assembly of large NGS datasets on a desktop computer. BMC bioinformatics, 13(1):48. 2012.
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  • Manuel Lafond, Krister M. Swenson, Nadia El-Mabrouk. An Optimal Reconciliation Algorithm for Gene Trees with Polytomies. In WABI 2012, 7534 volume of LNBI, pp. 106-122, 2012.
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  • Angelique D'Hont et al.. The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature, 488(7410):213-217. 2012.
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  • Andrew McPherson, Chunxiao Wu, Iman Hajirasouliha, Fereydoun Hormozdiari, Faraz Hach, Anna Lapuk, Stanislav Volik, Sohrab Shah, Colin Collins, S. Cenk Sahinalp. Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seqand low coverage genome sequence data. Bioinformatics, 27(11):1481-1488. 2011.
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  • Yu Lin, Bernard M. E. Moret. A new genomic evolutionary model for rearrangements, duplications, and lossesthat applies across eukaryotes and prokaryotes. Journal of computational biology, 18(9):1055-1064. 2011.
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  • Paul Medvedev, Son Pham, Mark Chaisson, Glenn Tesler, Pavel Pevzner. Paired de bruijn graphs: a novel approach for incorporating mate pair informationinto genome assemblers. Journal of computational biology : a journal of computational molecular cell biology, 18(11):1625-1634. 2011.
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  • Marilia D. V. Braga, Eyla Willing, Jens Stoye. Double cut and join with insertions and deletions. Journal of computational biology, 18(9):1167-1174. 2011.
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  • Shay Zakov, Dekel Tsur, Michal Ziv-Ukelson. Reducing the worst case running times of a family of RNA and CFG problems, using Valiant's approach. Algorithms Mol Biol, 6(1):20. 2011.
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  • Patrick Ng, Uri Keich. Alignment constrained sampling. Journal of computational biology, 18(2):155-158. 2011.
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  • Jr-Shiuan Yang, Michael D. Phillips, Doron Betel, Ping Mu, Andrea Ventura, Adam C. Siepel, Kevin C. Chen, Eric C. Lai. Widespread regulatory activity of vertebrate microRNA* species. RNA, 17(2):312-316. 2011.
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  • Ryan E. Mills, Klaudia Walter, Chip Stewart, et al.. Mapping copy number variation by population-scale genome sequencing. Nature, 470(7332):59-65. 2011. Clanok poskytneme zaujemcom.
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  • Adi Livnat, Christos Papadimitriou, Nicholas Pippenger, Marcus W. Feldman. Sex, mixability, and modularity. Proceedings of the National Academy of Sciences of the United States of America, 107(4):1452-1457. 2010.
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