2-AIN-505, 2-AIN-251: Seminár z bioinformatiky (1) a (3)
Zima 2014
Zoznam článkov

• Minh Duc Cao, Edward Tasker, Kai Willadsen, Michael Imelfort, Sailaja Vishwanathan, Sridevi Sureshkumar, Sureshkumar Balasubramanian, Mikael Boden. Inferring short tandem repeat variation from paired-end short reads. Nucleic acids research, 42(3):e16. 2014.
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• Kathrin Trappe, Anne-Katrin Emde, Hans-Christian Ehrlich, Knut Reinert. Gustaf: Detecting and correctly classifying SVs in the NGS twilight zone. Bioinformatics, 2014.
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• Gene Myers. Efficient Local Alignment Discovery amongst Noisy Long Reads. In WABI 2014, pp. 52-67, 2014.
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• Vladimír Boža, Broňa Brejová, Tomáš Vinař. GAML: Genome Assembly by Maximum Likelihood. In D. Brown, B. Morgenstern, ed., Algorithms in Bioinformatics, 14th International Workshop (WABI), 8701 volume of pp. 122-134, Wroclaw, Poland, 2014. Springer.
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• Yu Lin, Fei Hu, Jijun Tang, Bernard M. E. Moret. Maximum likelihood phylogenetic reconstruction from high-resolution whole-genome data and a tree of 68 eukaryotes. Pacific Symposium on Biocomputing, :285-286. 2013.
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• Viraj Deshpande, Eric DK Fung, Son Pham, Vineet Bafna. Cerulean: A hybrid assembly using high throughput short and long reads. In WABI 2013, 2013.
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• Manuel Lafond, Krister M. Swenson, Nadia El-Mabrouk. An Optimal Reconciliation Algorithm for Gene Trees with Polytomies. In RECOMB 2012, pp. 106-122, 2012.
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• Tobias Marschall, Ivan G. Costa, Stefan Canzar, Markus Bauer, Gunnar W. Klau, Alexander Schliep, Alexander Schonhuth. CLEVER: clique-enumerating variant finder. Bioinformatics, 28(22):2875-2882. 2012.
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• Yue Jiang, Yadong Wang, Michael Brudno. PRISM: pair-read informed split-read mapping for base-pair level detection ofinsertion, deletion and structural variants. Bioinformatics, 28(20):2576-2583. 2012.
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• Can Alkan, Bradley P. Coe, Evan E. Eichler. Genome structural variation discovery and genotyping. Nature reviews. Genetics, 12(5):363-366. 2011.
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• Sante Gnerre, Iain Maccallum, Dariusz Przybylski, Filipe J. Ribeiro, Joshua N. Burton, Bruce J. Walker, Ted Sharpe, Giles Hall, Terrance P. Shea, Sean Sykes, Aaron M. Berlin, Daniel Aird, Maura Costello, Riza Daza, Louise Williams, Robert Nicol, Andreas Gnirke, Chad Nusbaum, Eric S. Lander, David B. Jaffe. High-quality draft assemblies of mammalian genomes from massively parallelsequence data. Proceedings of the National Academy of Sciences of the United States of America, 108(4):1513-1518. 2011.
  [ Abstract ] [ BibTeX ] [ PubMed ]
   
• Jared T. Simpson, Richard Durbin. Efficient construction of an assembly string graph using the FM-index. Bioinformatics, 26(12):i367-373. 2010.
  [ Abstract ] [ BibTeX ] [ PubMed ]