Seminár: | ||
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Utorok 17:20, M-VIII | ||
Vyučujúci: | ||
Mgr. Tomáš Vinař, PhD | M-163, | |
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doc. Mgr. Broňa Brejová, PhD | M-163, | |
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Oznamy: | ||
Prvé stretnutie sa uskutoční 27.9. o 17:20, kde preberieme
organizačné detaily a budeme mať aj prvú prezentáciu. | ||
Zoznam prezentácií: |
20.9.2016 seminár nebude | |
27.9.2016 Tomáš Vinař | Matei David, L. J. Dursi, Delia Yao, Paul C. Boutros, Jared T. Simpson. Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data. Bioinformatics, 2016. link |
4.10.2016 Vlado Boža | Matthew Loose, Sunir Malla, Michael Stout. Real-time selective sequencing using nanopore technology. Nature methods, 2016. link |
11.10.2016 Dávid Simeunovič | Yesesri Cherukuri, Sarath Chandra Janga. Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches. BMC genomics, 2016. link |
18.10.2016 Jaro Budiš | Jared T Simpson, Rachael Workman, Philip C Zuzarte, Matei David, Lewis Jonathan Dursi, Winston Timp. Detecting DNA Methylation using the Oxford Nanopore Technologies MinION sequencer. Technical Report 047142, bioRxiv, 2016. link |
25.10.2016 Dominika Čierna | Jaina Mistry, Robert D. Finn, Sean R. Eddy, Alex Bateman, Marco Punta. Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions. Nucleic acids research, 2013. link |
1.11.2016 sviatok | |
8.11.2016 Magdaléna Kacejová | Olof Emanuelsson, Soren Brunak, Gunnar von Heijne, Henrik Nielsen. Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc, 2007. link |
15.11.2016 Matej Krajčovič | Nathan J. Kuwada, Beth Traxler, Paul A. Wiggins. Genome-scale quantitative characterization of bacterial protein localization dynamics throughout the cell cycle. Molecular microbiology, 2015. link |
22.11.2016 Broňa Brejová | Alexandros A. Pittis, Toni Gabaldon. Late acquisition of mitochondria by a host with chimaeric prokaryotic ancestry. Nature, 2016. link |
29.11.2016 Tomáš Vinař | Martin WF, Roettger M, Ku C, Garg SG, Nelson-Sathi S, Landan G.. Late mitochondrial origin is pure artefact. Technical Report 055368, bioRxiv, 2016. link Alexandros A. Pittis, Toni Gabaldon. On phylogenetic branch lengths distribution and the late acquistion of mitochondria. Technical Report 064873, biorxiv, 2016. link |
6.12.2016 | |
13.12.2016 |