2-AIN-505, 2-AIN-251: Seminár z bioinformatiky (1) a (3)
Zima 2016
Rozvrh

Seminár:
Utorok 17:20, M-VIII
 
Vyučujúci:
Mgr. Tomáš Vinař, PhD M-163,
 
 
doc. Mgr. Broňa Brejová, PhD M-163,
 
 
Oznamy:
Prvé stretnutie sa uskutoční 27.9. o 17:20, kde preberieme organizačné detaily a budeme mať aj prvú prezentáciu.
 
Zoznam prezentácií:
20.9.2016
seminár nebude
27.9.2016
Tomáš Vinař

Matei David, L. J. Dursi, Delia Yao, Paul C. Boutros, Jared T. Simpson. Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data. Bioinformatics, 2016. link

4.10.2016
Vlado Boža

Matthew Loose, Sunir Malla, Michael Stout. Real-time selective sequencing using nanopore technology. Nature methods, 2016. link

11.10.2016
Dávid Simeunovič

Yesesri Cherukuri, Sarath Chandra Janga. Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches. BMC genomics, 2016. link

18.10.2016
Jaro Budiš

Jared T Simpson, Rachael Workman, Philip C Zuzarte, Matei David, Lewis Jonathan Dursi, Winston Timp. Detecting DNA Methylation using the Oxford Nanopore Technologies MinION sequencer. Technical Report 047142, bioRxiv, 2016. link

25.10.2016
Dominika Čierna

Jaina Mistry, Robert D. Finn, Sean R. Eddy, Alex Bateman, Marco Punta. Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions. Nucleic acids research, 2013. link

1.11.2016
sviatok
8.11.2016
Magdaléna Kacejová

Olof Emanuelsson, Soren Brunak, Gunnar von Heijne, Henrik Nielsen. Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc, 2007. link

15.11.2016
Matej Krajčovič

Nathan J. Kuwada, Beth Traxler, Paul A. Wiggins. Genome-scale quantitative characterization of bacterial protein localization dynamics throughout the cell cycle. Molecular microbiology, 2015. link

22.11.2016
Broňa Brejová

Alexandros A. Pittis, Toni Gabaldon. Late acquisition of mitochondria by a host with chimaeric prokaryotic ancestry. Nature, 2016. link

29.11.2016
Tomáš Vinař

Martin WF, Roettger M, Ku C, Garg SG, Nelson-Sathi S, Landan G.. Late mitochondrial origin is pure artefact. Technical Report 055368, bioRxiv, 2016. link

Alexandros A. Pittis, Toni Gabaldon. On phylogenetic branch lengths distribution and the late acquistion of mitochondria. Technical Report 064873, biorxiv, 2016. link

6.12.2016
13.12.2016