2-AIN-505, 2-AIN-251: Seminár z bioinformatiky (1) a (3)
Zima 2017
Zoznam článkov

• Jarno Alanko, Fabio Cunial, Djamal Belazzougui, Veli Makinen. A framework for space-efficient read clustering in metagenomic samples. BMC bioinformatics, 18(Suppl 3):59. 2017.
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• Adam M. Novak et al.. Genome Graphs. Technical Report 101378, bioRxiv, 2-17.
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• Christoph Lippert, Riccardo Sabatini, M. Cyrus Maher, Eun Yong Kang, Seunghak Lee, Okan Arikan, Alena Harley, Axel Bernal, Peter Garst, Victor Lavrenko, Ken Yocum, Theodore Wong, Mingfu Zhu, Wen-Yun Yang, Chris Chang, Tim Lu, Charlie W. H. Lee, Barry Hicks, Smriti Ramakrishnan, Haibao Tang, Chao Xie, Jason Piper, Suzanne Brewerton, Yaron Turpaz, Amalio Telenti, Rhonda K. Roby, Franz J. Och, J. Craig Venter. Identification of individuals by trait prediction using whole-genome sequencingdata. Proceedings of the National Academy of Sciences of the United States of America, 114(38):10166-10171. 2017.
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• Aleksey V. Zimin, Daniela Puiu, Ming-Cheng Luo, Tingting Zhu, Sergey Koren, Guillaume Marcais, James A. Yorke, Jan Dvorak, Steven L. Salzberg. Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, aprogenitor of bread wheat, with the MaSuRCA mega-reads algorithm. Genome research, 27(5):787-792. 2017.
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• Robert Vaser, Ivan Sovic, Niranjan Nagarajan, Mile Sikic. Fast and accurate de novo genome assembly from long uncorrected reads. Genome research, 27(5):737-746. 2017.
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• Sergey Koren, Brian P. Walenz, Konstantin Berlin, Jason R. Miller, Nicholas H. Bergman, Adam M. Phillippy. Canu: scalable and accurate long-read assembly via adaptive k-mer weighting andrepeat separation. Genome research, 27(5):722-736. 2017.
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• Tanel Parnamaa, Leopold Parts. Accurate Classification of Protein Subcellular Localization from High-Throughput Microscopy Images Using Deep Learning. G3 (Bethesda), 7(5):1385-1392. 2017.
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• Sheng Wang, Siqi Sun, Zhen Li, Renyu Zhang, Jinbo Xu. Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model. PLoS Comput Biol, 13(1):e1005324. 2017.
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• Avanti Shrikumar, Peyton Greenside, Anshul Kundaje. Learning Important Features Through Propagating Activation Differences. In ICML 2017, pp. 3145-3153, 2017.
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• Heng Li. Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences. Bioinformatics, 32(14):2103-2110. 2016.
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• Catia Pinto, Diogo Pinho, Remy Cardoso, Valeria Custodio, Joana Fernandes, Susana Sousa, Miguel Pinheiro, Conceicao Egas, Ana C. Gomes. Wine fermentation microbiome: a landscape from different Portuguese wineappellations. Front Microbiol, 6:905. 2015.
  [ Abstract ] [ BibTeX ] [ PubMed ]