2-AIN-506 a 2-AIN-252: Seminár z bioinformatiky (2) a (4)
Leto 2018
Rozvrh

Seminár:
Utorok 17:20, M-X
Vyučujúci:
doc. Mgr. Tomáš Vinař, PhD	M-163,

doc. Mgr. Broňa Brejová, PhD	M-163,

Oznamy:
Seminár začína už 20.2. prvou prezentáciou
Zoznam prezentácií:

20.2.2018 Rado Chládek	Matthew Combs, Emily E. Puckett, Jonathan Richardson, Destiny Mims, Jason Munshi-South. Spatial population genomics of the brown rat (Rattus norvegicus) in New YorkCity. Molecular ecology, 2018. link Daniel John Lawson, Garrett Hellenthal, Simon Myers, Daniel Falush. Inference of population structure using dense haplotype data. PLoS Genet, 2012. link
27.2.2018 Mário Lipovský	Ross P. Byrne, Rui Martiniano, Lara M. Cassidy, Matthew Carrigan, Garrett Hellenthal, Orla Hardiman, Daniel G. Bradley, Russell L. McLaughlin. Insular Celtic population structure and genomic footprints of migration. PLoS Genet, 2018. link Daniel John Lawson, Garrett Hellenthal, Simon Myers, Daniel Falush. Inference of population structure using dense haplotype data. PLoS Genet, 2012. link
6.3.2018 Rasťo Rabatin	Haotian Teng, Michael B. Hall, Tania Duarte, Minh Duc Cao, Lachlan J.M. Coin. Chiron: Translating nanopore raw signal directly into nucleotide sequence using deep learning. Technical Report bioRxiv:179531, 2017. link Alex Graves, Santiago Fernandez, Faustino Gomez, Jurgen Schmidhuber. Connectionist temporal classification: labelling unsegmented sequence data with recurrent neural networks. In ICML '06 Proceedings of the 23rd international conference on Machine learning, 2006. link
13.3.2018 Tomáš Vinař	Marcus H Stoiber, Joshua Quick, Rob Egan, Ji Eun Lee, Susan E Celniker, Robert Neely, Nicholas Loman, Len Pennacchio, James B Brown. De novo Identification of DNA Modifications Enabled by Genome-Guided Nanopore Signal Processing. Technical Report bioRxiv:094672, bioRxiv, 2016. link
20.3.2018 Dávid Simeunovič	Arthur C. Rand, Miten Jain, Jordan M. Eizenga, Audrey Musselman-Brown, Hugh E. Olsen, Mark Akeson, Benedict Paten. Mapping DNA methylation with high-throughput nanopore sequencing. Nature methods, 2017. link
27.3.2018 seminár nebude
3.4.2018 Veľká noc
10.4.2018 Matúš Zeleňák	Ngan Nguyen, Glenn Hickey, Daniel R. Zerbino, Brian Raney, Dent Earl, Joel Armstrong, W. James Kent, David Haussler, Benedict Paten. Building a pan-genome reference for a population. Journal of computational biology : a journal of computational molecular cell biology, 2015. link
17.4.2018 Matej Krajčovič	Guillaume Holley, Roland Wittler, Jens Stoye. Bloom Filter Trie: an alignment-free and reference-free data structure forpan-genome storage. Algorithms Mol Biol, 2016. link
24.4.2018 Roman Beňo	David Haussler, Maciej Smuga-Otto, Benedict Paten, Adam M. Novak, Sergei Nikitin, Maria Zueva, Dmitrii Miagkov. A Flow Procedure for the Linearization of Genome Sequence Graphs. In RECOMB 2017: Research in Computational Molecular Biology, link
1.5.2018 sviatok
8.5.2018 sviatok
15.5.2018 Askar Gafurov	Gabriel Minarik, Gabriela Repiska, Michaela Hyblova, Emilia Nagyova, Katarina Soltys, Jaroslav Budis, Frantisek Duris, Rastislav Sysak, Maria {Gerykova Bujalkova}, Barbora Vlkova-Izrael, Orsolya Biro, Balint Nagy, Tomas Szemes. Utilization of Benchtop Next Generation Sequencing Platforms Ion Torrent PGM and MiSeq in Noninvasive Prenatal Testing for Chromosome 21 Trisomy and Testing ofImpact of In Silico and Physical Size Selection on Its Analytical Performance. PLoS One, 2015. link