2-AIN-506 a 2-AIN-252: Seminár z bioinformatiky (2) a (4)
Leto 2018
Zoznam článkov

• Ross P. Byrne, Rui Martiniano, Lara M. Cassidy, Matthew Carrigan, Garrett Hellenthal, Orla Hardiman, Daniel G. Bradley, Russell L. McLaughlin. Insular Celtic population structure and genomic footprints of migration. PLoS Genet, 14(1):e1007152. 2018.
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• Matthew Combs, Emily E. Puckett, Jonathan Richardson, Destiny Mims, Jason Munshi-South. Spatial population genomics of the brown rat (Rattus norvegicus) in New YorkCity. Molecular ecology, 27(1):83-98. 2018.
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• David Haussler, Maciej Smuga-Otto, Benedict Paten, Adam M. Novak, Sergei Nikitin, Maria Zueva, Dmitrii Miagkov. A Flow Procedure for the Linearization of Genome Sequence Graphs. In RECOMB 2017: Research in Computational Molecular Biology, pp. 34-49,
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• Arthur C. Rand, Miten Jain, Jordan M. Eizenga, Audrey Musselman-Brown, Hugh E. Olsen, Mark Akeson, Benedict Paten. Mapping DNA methylation with high-throughput nanopore sequencing. Nature methods, 14(4):411-413. 2017.
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• Haotian Teng, Michael B. Hall, Tania Duarte, Minh Duc Cao, Lachlan J.M. Coin. Chiron: Translating nanopore raw signal directly into nucleotide sequence using deep learning. Technical Report bioRxiv:179531, 2017.
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• Guillaume Holley, Roland Wittler, Jens Stoye. Bloom Filter Trie: an alignment-free and reference-free data structure forpan-genome storage. Algorithms Mol Biol, 11:3. 2016.
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• Marcus H Stoiber, Joshua Quick, Rob Egan, Ji Eun Lee, Susan E Celniker, Robert Neely, Nicholas Loman, Len Pennacchio, James B Brown. De novo Identification of DNA Modifications Enabled by Genome-Guided Nanopore Signal Processing. Technical Report bioRxiv:094672, bioRxiv, 2016.
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• Gabriel Minarik, Gabriela Repiska, Michaela Hyblova, Emilia Nagyova, Katarina Soltys, Jaroslav Budis, Frantisek Duris, Rastislav Sysak, Maria {Gerykova Bujalkova}, Barbora Vlkova-Izrael, Orsolya Biro, Balint Nagy, Tomas Szemes. Utilization of Benchtop Next Generation Sequencing Platforms Ion Torrent PGM and MiSeq in Noninvasive Prenatal Testing for Chromosome 21 Trisomy and Testing ofImpact of In Silico and Physical Size Selection on Its Analytical Performance. PLoS One, 10(12):e0144811. 2015.
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• Ngan Nguyen, Glenn Hickey, Daniel R. Zerbino, Brian Raney, Dent Earl, Joel Armstrong, W. James Kent, David Haussler, Benedict Paten. Building a pan-genome reference for a population. Journal of computational biology : a journal of computational molecular cell biology, 22(5):387-401. 2015.
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• Daniel John Lawson, Garrett Hellenthal, Simon Myers, Daniel Falush. Inference of population structure using dense haplotype data. PLoS Genet, 8(1):e1002453. 2012.
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• Alex Graves, Santiago Fernandez, Faustino Gomez, Jurgen Schmidhuber. Connectionist temporal classification: labelling unsegmented sequence data with recurrent neural networks. In ICML '06 Proceedings of the 23rd international conference on Machine learning, pp. 369-376, 2006.
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