2-AIN-505, 2-AIN-251: Seminár z bioinformatiky (1) a (3)
Zima 2018
Zoznam článkov

• Ruibang Luo, Fritz J. Sedlazeck, Tak-Wah Lam, Michael Schatz. Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing. Technical Report 310458, bioRxiv, 2018.
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• Fritz J. Sedlazeck, Philipp Rescheneder, Moritz Smolka, Han Fang, Maria Nattestad, Arndt {von Haeseler}, Michael C. Schatz. Accurate detection of complex structural variations using single-moleculesequencing. Nature methods, 15(6):461-468. 2018.
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• Koren S, Rhie A, Walenz BP, Dilthey AT, Bickhart DM, Kingan SB, Hiendleder S, Williams JL, Smith TP, Phillippy A.. Complete assembly of parental haplotypes with trio binning. Technical Report 271486, bioRxiv, 2018.
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• Chirag J. Patel, Belinda Burford, John P. A. Ioannidis. Assessment of vibration of effects due to model specification can demonstrate theinstability of observational associations. Journal of clinical epidemiology, 68(9):1046-1048. 2015.
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• Chen-Shan Chin, Paul Peluso, Fritz J. Sedlazeck, Maria Nattestad, Gregory T. Concepcion, Alicia Clum, Christopher Dunn, Ronan O'Malley, Rosa Figueroa-Balderas, Abraham Morales-Cruz, Grant R. Cramer, Massimo Delledonne, Chongyuan Luo, Joseph R. Ecker, Dario Cantu, David R. Rank, Michael C. Schatz. Phased diploid genome assembly with single-molecule real-time sequencing. Nature methods, 13(12):1050-1054. 2016.
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• Huan Fan, Anthony R. Ives, Yann Surget-Groba, Charles H. Cannon. An assembly and alignment-free method of phylogeny reconstruction fromnext-generation sequencing data. BMC genomics, 16:522. 2015.
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• Guohong Albert Wu, Se-Ran Jun, Gregory E. Sims, Sung-Hou Kim. Whole-proteome phylogeny of large dsDNA virus families by an alignment-freemethod. Proceedings of the National Academy of Sciences of the United States of America, 106(31):12826-31. 2009.
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