2-AIN-505, 2-AIN-251: Seminár z bioinformatiky (1) a (3)
Zima 2019
Rozvrh

Seminár:
Utorok 17:20, M-VIII
Vyučujúci:
doc. Mgr. Tomáš Vinař, PhD	M-163,

doc. Mgr. Broňa Brejová, PhD	M-163,

Oznamy:
Seminár začína 24.9.2019 prvou prezentáciou
Zoznam prezentácií:

24.9.2019 Askar Gafurov	Almodaresi F , Pandey P , Ferdman M , Johnson R , Patro R . An Efficient, Scalable and Exact Representation of High-Dimensional Color Information Enabled via de Bruijn Graph Search. In RECOMB 2019, 2019. link
1.10.2019 seminár nebude
8.10.2019 Dominika Szabová	Michal Levy-Sakin, Steven Pastor, Yulia Mostovoy, Le Li, Alden K. Y. Leung, Jennifer McCaffrey, Eleanor Young, Ernest T. Lam, Alex R. Hastie, Karen H. Y. Wong, Claire Y. L. Chung, Walfred Ma, Justin Sibert, Ramakrishnan Rajagopalan, Nana Jin, Eugene Y. C. Chow, Catherine Chu, Annie Poon, Chin Lin, Ahmed Naguib, Wei-Ping Wang, Han Cao, Ting-Fung Chan, Kevin Y. Yip, Ming Xiao, Pui-Yan Kwok. Genome maps across 26 human populations reveal population-specific patterns ofstructural variation. Nat Commun, 2019. link
15.10.2019 Samuel Molčan	Satoshi Koide, Keisuke Kawano, Takuro Kutsuna. Neural Edit Operations for Biological Sequences. In NIPS 2018, 2018. link
22.10.2019 Ondrej Vargovčík	Amaiur Esnaola, Aitor Arrizabalaga-Escudero, Jorge Gonzalez-Esteban, Arturo Elosegi, Joxerra Aihartza. Determining diet from faeces: Selection of metabarcoding primers for the insectivore Pyrenean desman (Galemys pyrenaicus). PLoS One, 2018. link
29.10.2019 Adrián Goga	Ryan R. Wick, Louise M. Judd, Kathryn E. Holt. Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutionalneural networks. PLoS Comput Biol, 2018. link
5.11.2019 Tereza Geisseová	Lee I , Razaghi R , Gilpatrick T , Sadowski N , Sedlazeck FJ , Timp W . Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing. Technical Report https://doi.org/10.1101/504993, bioRxiv, 2018. link
12.11.2019 Lucia Sucháňová	Jared T. Simpson, Rachael E. Workman, P. C. Zuzarte, Matei David, L. J. Dursi, Winston Timp. Detecting DNA cytosine methylation using nanopore sequencing. Nature methods, 2017. Supplement https://media.nature.com/original/nature-assets/nmeth/journal/v14/n4/extref/nmeth.4184-S1.pdf. link
19.11.2019 Eduard Batmendijn	Pierre Marijon, Rayan Chikhi, Jean-Stephane Varre. Graph analysis of fragmented long-read bacterial genome assemblies. Bioinformatics, 2019. link
26.11.2019
3.12.2019 Fernando Eugénio	Mark R. Christie, Melanie L. Marine, Samuel E. Fox, Rod A. French, Michael S. Blouin. A single generation of domestication heritably alters the expression of hundreds of genes. Nat Commun, 2016. link
10.12.2019
17.12.2019