1-DAV-202 Data Management 2023/24
Previously 2-INF-185 Data Source Integration
User contributions
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- 11:34, 2 May 2024 diff hist +10 HWcpp →Task C
- 11:33, 2 May 2024 diff hist +34 HWcpp →Task B
- 11:28, 2 May 2024 diff hist +56 HWcpp →Overview
- 11:27, 2 May 2024 diff hist +199 HWcpp →Overview
- 10:50, 2 May 2024 diff hist +54 Materials
- 10:31, 2 May 2024 diff hist +448 HWcpp
- 15:36, 30 April 2024 diff hist -9 HWcpp →Overview
- 15:30, 30 April 2024 diff hist +116 Materials
- 15:28, 30 April 2024 diff hist +18 MediaWiki:Sitenotice current
- 15:27, 30 April 2024 diff hist +320 HWcpp →Task C
- 15:24, 30 April 2024 diff hist +167 HWcpp →Task B
- 15:21, 30 April 2024 diff hist +737 HWcpp →Task C
- 15:13, 30 April 2024 diff hist -2 HWcpp →Task A
- 15:13, 30 April 2024 diff hist +2,798 HWcpp
- 14:17, 30 April 2024 diff hist +47 Lcpp current
- 14:00, 30 April 2024 diff hist +324 Lcpp
- 14:37, 17 April 2024 diff hist +11 MediaWiki:Sitenotice
- 14:35, 17 April 2024 diff hist -4 Materials
- 14:35, 17 April 2024 diff hist 0 Materials
- 10:18, 11 April 2024 diff hist +1 Ljavascript →Overview of the approach current
- 10:17, 11 April 2024 diff hist +22 Ljavascript →Overview of the approach
- 10:17, 11 April 2024 diff hist +2 Ljavascript →Simple example
- 10:16, 11 April 2024 diff hist +36 Ljavascript →Overview of the approach
- 10:15, 11 April 2024 diff hist +2,614 Ljavascript →Using multiple charts in the same page (merging examples)
- 10:03, 11 April 2024 diff hist +54 Ljavascript →Overview of the approach
- 10:01, 11 April 2024 diff hist -9 Materials
- 10:01, 11 April 2024 diff hist 0 N File:Lflask.png current
- 09:52, 11 April 2024 diff hist -9 Materials
- 21:55, 10 April 2024 diff hist +2 Ljavascript →Overview of the approach
- 21:53, 10 April 2024 diff hist +704 Ljavascript
- 20:47, 10 April 2024 diff hist +7 HWbioinf3 →Task B: UCSC browser current
- 20:41, 10 April 2024 diff hist -13 HWbioinf3 →Task C: Examining larger vcf files
- 20:37, 10 April 2024 diff hist +78 HWbioinf3 →Task B: UCSC browser
- 20:14, 10 April 2024 diff hist +40 Lbioinf3 →Programs and file formats current
- 20:13, 10 April 2024 diff hist -47 Lbioinf3 →Polymorphisms
- 11:19, 10 April 2024 diff hist +3 Ljavascript
- 11:58, 4 April 2024 diff hist -3 HWbioinf3 →Task C: Examining larger vcf files
- 11:55, 4 April 2024 diff hist +9 MediaWiki:Sitenotice
- 08:30, 4 April 2024 diff hist -17 Materials
- 07:54, 4 April 2024 diff hist -259 HWbioinf2 current
- 07:53, 4 April 2024 diff hist +783 Lbioinf2 →Gene expression current
- 07:46, 4 April 2024 diff hist +47 HWbioinf2 →Task C: Visualizing in IGV
- 07:45, 4 April 2024 diff hist +16 HWbioinf2 →Task B: Aligning RNA-seq reads
- 07:39, 4 April 2024 diff hist +612 HWbioinf2 →Task B: Aligning RNA-seq reads
- 21:57, 3 April 2024 diff hist +46 HWbioinf2 →Task B: Aligning RNA-seq reads
- 21:55, 3 April 2024 diff hist -576 HWbioinf2 →Task B: Aligning RNA-seq reads
- 18:25, 21 March 2024 diff hist -17 HWmake →Further possibilities current
- 18:24, 21 March 2024 diff hist -2 HWmake →Task C (adding statistics to Makefile)
- 15:21, 21 March 2024 diff hist +3 MediaWiki:Sitenotice
- 15:21, 21 March 2024 diff hist +88 MediaWiki:Sitenotice
- 15:01, 21 March 2024 diff hist -52 MediaWiki:Sitenotice
- 09:39, 21 March 2024 diff hist +9 Lweb current
- 08:55, 21 March 2024 diff hist 0 HWbioinf1 →Task C: compare assemblies using Quast command current
- 08:33, 21 March 2024 diff hist -16 Materials
- 12:40, 14 March 2024 diff hist 0 Project →Project topics current
- 12:11, 14 March 2024 diff hist +73 Project →Project topics
- 12:09, 14 March 2024 diff hist +32 Project →Typical scheme of a project
- 12:08, 14 March 2024 diff hist +16 Project →Project topics
- 12:06, 14 March 2024 diff hist +3 Project →Typical scheme of a project
- 12:05, 14 March 2024 diff hist +180 Project →Submitting projects
- 11:58, 14 March 2024 diff hist +3 Project →Project proposal
- 11:56, 14 March 2024 diff hist +2 Materials
- 09:42, 14 March 2024 diff hist +729 HWsql →Task C (Python+SQL) current
- 09:39, 14 March 2024 diff hist +1 Lweb →Other useful tips
- 09:21, 14 March 2024 diff hist 0 Lweb
- 09:03, 14 March 2024 diff hist +4 Materials
- 09:02, 14 March 2024 diff hist -41 Python current
- 08:59, 14 March 2024 diff hist +192 Python
- 08:58, 14 March 2024 diff hist -3 HWsql →Preparation and submitting
- 08:57, 14 March 2024 diff hist -143 HWsql
- 08:38, 14 March 2024 diff hist +26 Lsql →Overview, documentation
- 08:37, 14 March 2024 diff hist +154 Lsql →Dataset for this lecture
- 08:35, 14 March 2024 diff hist -26 Lsql →Overview, documentation
- 08:33, 14 March 2024 diff hist -6,987 Lsql →Several Python scripts
- 08:33, 14 March 2024 diff hist +7,198 N Python Created page with "This page contains a brief Python tutorial for students who are not very familiar with the language. We will process files <tt>series.csv</tt> and <tt>episodes.csv</tt> introd..."
- 16:46, 7 March 2024 diff hist -6 Materials
- 16:46, 7 March 2024 diff hist +19 N HWpython Brona moved page HWpython to HWsql current Tag: New redirect
- 16:46, 7 March 2024 diff hist 0 m HWsql Brona moved page HWpython to HWsql
- 16:45, 7 March 2024 diff hist +8 HWsql
- 16:44, 7 March 2024 diff hist +18 N Lpython Brona moved page Lpython to Lsql current Tag: New redirect
- 16:44, 7 March 2024 diff hist 0 m Lsql Brona moved page Lpython to Lsql
- 16:43, 7 March 2024 diff hist -15 Lsql
- 15:01, 7 March 2024 diff hist -1 MediaWiki:Sitenotice
- 11:37, 7 March 2024 diff hist -9 Materials
- 10:53, 7 March 2024 diff hist +135 HWmake →Task C (adding statistics to Makefile)
- 10:38, 7 March 2024 diff hist +155 HWmake →Task C (adding statistics to Makefile)
- 10:32, 7 March 2024 diff hist +134 HWmake →Task D (running make)
- 10:27, 7 March 2024 diff hist +31 HWmake →Task C (running make)
- 10:25, 7 March 2024 diff hist +2,384 HWmake →Task B (finishing Makefile)
- 09:50, 7 March 2024 diff hist -7 HWmake →Task B (finishing Makefile)
- 09:49, 7 March 2024 diff hist +42 HWmake →Task C (running make)
- 09:39, 7 March 2024 diff hist +85 HWmake →Task B (finishing Makefile)
- 09:38, 7 March 2024 diff hist 0 HWmake →Task C (running make)
- 09:37, 7 March 2024 diff hist -6 HWmake →Task C (running make)
- 09:37, 7 March 2024 diff hist +178 HWmake →Further possibilities
- 09:33, 7 March 2024 diff hist +1 HWmake →Task C (running make)
- 09:33, 7 March 2024 diff hist +259 HWmake →Task C (running make)
- 09:21, 7 March 2024 diff hist -411 HWmake →Task B (finishing Makefile)
- 09:13, 7 March 2024 diff hist +20 HWmake →Task A (long job)
- 09:13, 7 March 2024 diff hist -89 HWmake →Task A (long job)
- 09:01, 7 March 2024 diff hist -76 HWmake →Files and submitting
- 09:00, 7 March 2024 diff hist +22 HWmake →Build a consensus tree
- 08:58, 7 March 2024 diff hist +27 HWmake →Build phylogenetic tree for each grup
- 15:38, 29 February 2024 diff hist -9 Materials
- 13:10, 29 February 2024 diff hist 0 Lbash current
- 12:02, 29 February 2024 diff hist -31 HWbash current
- 10:18, 29 February 2024 diff hist +23 Lbash
- 10:16, 29 February 2024 diff hist +14 Lbash →Perl one-liners
- 10:13, 29 February 2024 diff hist +48 Lbash →Programs sed and awk
- 10:12, 29 February 2024 diff hist +11 Lbash →Commands diff, comm (comparing files)
- 10:12, 29 February 2024 diff hist -12 Lbash →Commands sort, uniq
- 16:04, 28 February 2024 diff hist +10 Connecting to server →Copying files to/from the server via scp current
- 16:03, 28 February 2024 diff hist +19 Connecting to server →Mounting files from Linux server to your Linux computer via sshfs
- 16:03, 28 February 2024 diff hist +85 Connecting to server →Copying files to/from the server via scp
- 16:00, 28 February 2024 diff hist +14 Connecting to server →Connection through ssh
- 15:44, 28 February 2024 diff hist +261 Connecting to server
- 13:05, 28 February 2024 diff hist +1 HWbash →Task C (joining information)
- 13:06, 22 February 2024 diff hist +1 Rules →Protocols current
- 12:45, 22 February 2024 diff hist +81 Rules →Course format
- 12:43, 22 February 2024 diff hist +11 Rules →Academic integrity
- 12:42, 22 February 2024 diff hist +537 Project →Project topics
- 12:37, 22 February 2024 diff hist +168 Rules →Academic integrity
- 12:33, 22 February 2024 diff hist +172 Rules →Protocols
- 12:19, 22 February 2024 diff hist +19 HWperl →Task D (FASTQ trim) current
- 12:16, 22 February 2024 diff hist -1 HWperl →Task C (FASTQ quality)
- 12:14, 22 February 2024 diff hist +3 HWperl →Task B (FASTQ to FASTA)
- 12:14, 22 February 2024 diff hist +45 HWperl →Task B (FASTQ to FASTA)
- 12:12, 22 February 2024 diff hist -1 HWperl →Task A (series)
- 12:10, 22 February 2024 diff hist +18 Introduction →Course objectives current
- 12:09, 22 February 2024 diff hist +743 Introduction
- 22:28, 21 February 2024 diff hist +2 Lperl →Hash tables (associative array, dictionaries, maps) current
- 22:27, 21 February 2024 diff hist +8 Lperl →The second input file for today: DNA sequencing reads (fastq)
- 22:25, 21 February 2024 diff hist +1 Lperl →A sample Perl program
- 21:52, 21 February 2024 diff hist +2 Project →Project topics
- 21:52, 21 February 2024 diff hist +656 Project →Project topics
- 21:47, 21 February 2024 diff hist 0 Project →Project proposal
- 21:44, 21 February 2024 diff hist +6 Lperl →Hello world
- 21:40, 21 February 2024 diff hist +35 Lperl →Why Perl
- 21:38, 21 February 2024 diff hist +83 Command-line basics current
- 21:36, 21 February 2024 diff hist +62 Editors current
- 21:35, 21 February 2024 diff hist +33 Editors
- 21:33, 21 February 2024 diff hist -3 Connecting to server
- 21:14, 21 February 2024 diff hist +3 Rules →Course format
- 21:11, 21 February 2024 diff hist +23 Rules →Course format
- 21:09, 21 February 2024 diff hist +3 Rules →Oral exam
- 20:45, 21 February 2024 diff hist -321 Rules →Homework
- 20:41, 21 February 2024 diff hist +443 Rules →Course format
- 18:03, 21 February 2024 diff hist -9 Contact current
- 17:59, 21 February 2024 diff hist -110 MediaWiki:Sitenotice
- 16:51, 21 February 2024 diff hist +9 Materials
- 16:50, 21 February 2024 diff hist +2 Materials
- 16:48, 21 February 2024 diff hist +124 Materials
- 22:58, 25 January 2024 diff hist +158 OPTbash current
- 22:31, 25 January 2024 diff hist +206 Ljavascript
- 22:16, 25 January 2024 diff hist +57 Lflask →Structure of a Flask application
- 22:09, 25 January 2024 diff hist -77 Lflask →Running Flask
- 22:08, 25 January 2024 diff hist +101 Connecting to server
- 22:01, 25 January 2024 diff hist +299 Introduction →Course objectives
- 21:56, 25 January 2024 diff hist +41 Connecting to server →Copying files to/from the server via scp
- 21:52, 25 January 2024 diff hist +32 Connecting to server →Copying files to/from the server via scp
- 21:50, 25 January 2024 diff hist +10 Connecting to server →Connection through ssh
- 21:47, 25 January 2024 diff hist -241 Lflask →Running Flask
- 21:41, 25 January 2024 diff hist +1,363 N Screen Created page with "Screen is a command that allows you to have a program running on the server even if you close the ssh connection (deliberately / by mistake / due to network problems). It is p..." current
- 21:31, 25 January 2024 diff hist +6 Lweb →Parsing webpages
- 21:29, 25 January 2024 diff hist -231 HWbioinf1
- 21:11, 25 January 2024 diff hist -44 Lweb →Other useful tips
- 21:07, 25 January 2024 diff hist +84 Lmake →Interactive work on the cluster (qrsh), screen current
- 21:04, 25 January 2024 diff hist +3 Lmake →Job scheduling
- 21:04, 25 January 2024 diff hist 0 Lmake →Job Scheduling
- 21:03, 25 January 2024 diff hist +33 Lmake →Job Scheduling
- 21:01, 25 January 2024 diff hist +12 Materials
- 20:59, 25 January 2024 diff hist +5 Lweb →Parsing dates
- 20:58, 25 January 2024 diff hist +248 Lweb →Parsing webpages
- 22:03, 21 January 2024 diff hist +3 Lweb
- 21:55, 21 January 2024 diff hist +100 Command-line basics →Changing file permissions
- 21:53, 21 January 2024 diff hist +183 Command-line basics
- 21:50, 21 January 2024 diff hist +797 Command-line basics →Changing file permissions and group
- 21:43, 21 January 2024 diff hist +55 Command-line basics →Other file-related commands (cp -r, mv, rm, rmdir)
- 21:37, 21 January 2024 diff hist -2 Command-line basics →Files and folders
- 21:39, 16 June 2023 diff hist +133 Command-line basics →The long form of ls command
- 21:37, 16 June 2023 diff hist +1,050 Command-line basics →File permissions and other properties
- 21:37, 8 June 2023 diff hist +188 Command-line basics →File permissions and other properties
- 21:32, 8 June 2023 diff hist +1 Command-line basics →File permissions and other properties
- 21:30, 8 June 2023 diff hist +302 Command-line basics →File permissions and other properties
- 21:25, 8 June 2023 diff hist +100 Command-line basics
- 08:13, 30 May 2023 diff hist +122 Connecting to server →Copying files to/from the server via scp
- 13:38, 29 May 2023 diff hist +12 HWbioinf3 →Task C: Examining larger vcf files
- 14:05, 28 May 2023 diff hist +9 HWbash →Task C (joining information)
- 10:47, 28 May 2023 diff hist +1 HWbash →Task B (counting matches)
- 09:37, 28 May 2023 diff hist +40 HWbash →Task B (counting matches)
- 09:33, 28 May 2023 diff hist +2 HWbash →Task C (joining information)
- 09:33, 28 May 2023 diff hist +2 HWbash →Task A (counting proteins)
- 08:46, 24 May 2023 diff hist 0 MediaWiki:Sitenotice
- 18:12, 15 May 2023 diff hist +240,016 Data management 2022/23 current
- 18:04, 15 May 2023 diff hist +1,765 N Data management 2022/23 Created page with "Website for 2022/23 {| |- | 2023-02-13 || (BB/TV) || ALL || Introduction to the course || Contact, Introduction, Rules |- | || || || Introduction to Perl || Lpe..."
- 18:02, 15 May 2023 diff hist +30 Archive current
- 14:10, 9 May 2023 diff hist -18 MediaWiki:Sitenotice
- 14:06, 9 May 2023 diff hist +9 Materials
- 15:59, 24 April 2023 diff hist +14 Materials
- 15:58, 24 April 2023 diff hist +6 HWr2 →Task D: volcano plot, test on data generated from null hypothesis
- 15:57, 24 April 2023 diff hist +2 HWr2 →Task C: multiple testing correction
- 15:56, 24 April 2023 diff hist +42 HWr2 →Task B: Welch's t-test on microarray data
- 15:53, 24 April 2023 diff hist +20 HWr2 →Task A: sign test
- 15:49, 24 April 2023 diff hist +63 Lr2 →Multiple testing correction current
- 15:45, 24 April 2023 diff hist +5 Lr2 →Comparing two sets of values: Welch's t-test
- 15:43, 24 April 2023 diff hist +18 Lr2 →Introduction to statistical tests: sign test
- 15:40, 24 April 2023 diff hist +85 Lr2
- 15:54, 3 April 2023 diff hist 0 HWr1 current
- 15:51, 3 April 2023 diff hist +144 Lr1 current
- 15:41, 3 April 2023 diff hist +27 HWr1
- 15:34, 3 April 2023 diff hist +728 HWr1 →Expression data
- 15:21, 3 April 2023 diff hist +374 HWr1
- 15:15, 3 April 2023 diff hist +255 HWr1 →Task F
- 15:07, 3 April 2023 diff hist +382 HWr1 →Task E
- 16:14, 27 March 2023 diff hist +12 HWbioinf3 →Task B: UCSC browser
- 16:07, 27 March 2023 diff hist +71 Lbioinf3
- 15:57, 27 March 2023 diff hist +143 MediaWiki:Sitenotice
- 15:54, 27 March 2023 diff hist -9 Materials
- 17:07, 20 March 2023 diff hist -9 Materials
- 13:44, 13 March 2023 diff hist +5 HWbioinf1 →Task E: Align reads and assemblies to reference, visualize in IGV
- 13:37, 13 March 2023 diff hist +3 HWbioinf1 →Task D: create dotplots of assemblies
- 13:36, 13 March 2023 diff hist +11 HWbioinf1 →Task B: assemble the sequence from the reads
- 13:34, 13 March 2023 diff hist +35 HWbioinf1 →Task A: examine input files
- 13:31, 13 March 2023 diff hist +16 Lbioinf1 →File formats current
- 13:29, 13 March 2023 diff hist +5 Lbioinf1 →Sequence alignments and dotplots
- 13:27, 13 March 2023 diff hist 0 Lbioinf1 →Overview of DNA sequencing and assembly
- 13:27, 13 March 2023 diff hist +10 Lbioinf1 →Overview of DNA sequencing and assembly
- 13:25, 13 March 2023 diff hist -9 Materials
- 22:59, 12 March 2023 diff hist -9 MediaWiki:Sitenotice
- 17:17, 6 March 2023 diff hist -9 Materials
- 22:38, 4 March 2023 diff hist -8 HWsql →Task C (Python+SQL)
- 22:38, 4 March 2023 diff hist +6 HWsql →Introduction
- 22:37, 4 March 2023 diff hist +755 Lsql →Accessing a database from Python
- 22:25, 4 March 2023 diff hist +11 Lsql →Dataset for this lecture
- 22:24, 4 March 2023 diff hist +7 Lsql →Overview, documentation
- 22:17, 4 March 2023 diff hist +12 HWsql
- 22:13, 4 March 2023 diff hist +513 Lsql →Several Python scripts
- 22:08, 4 March 2023 diff hist +532 Lsql →Overview, documentation
- 21:39, 4 March 2023 diff hist +105 HWsql
- 21:34, 4 March 2023 diff hist +9 MediaWiki:Sitenotice
- 21:33, 4 March 2023 diff hist -515 Lsql
- 20:59, 26 February 2023 diff hist -15 HWmake
- 20:54, 26 February 2023 diff hist +12 HWmake →Task B (finishing Makefile)
- 20:38, 26 February 2023 diff hist +239 HWmake →Task B (finishing Makefile)
- 20:21, 26 February 2023 diff hist +15 HWmake
- 20:18, 26 February 2023 diff hist -232 HWmake →Task C (running make)
- 20:15, 26 February 2023 diff hist +342 HWmake →Task B (finishing Makefile)
- 19:27, 26 February 2023 diff hist +25 HWmake →Task A (long job)
- 19:04, 26 February 2023 diff hist +832 Lmake →Alternatives to Makefiles
- 18:56, 26 February 2023 diff hist +140 Lmake →Make
