1-BIN-301, 2-AIN-501 Methods in Bioinformatics

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Journal club papers

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Detaily ohľadom požiadavok na journal club nájdete v pravidlách predmetu.

2. Lunter G (2007). "Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes.". Bioinformatics 23 (13): i289-96. Čítajú Hraška, Ižip, Kacejová, Lipovský, Macko, Mayer

4. Clamp M, Fry B, Kamal M, Xie X, Cuff J, Lin MF et al. (2007). "Distinguishing protein-coding and noncoding genes in the human genome.". Proc Natl Acad Sci U S A 104 (49): 19428-33. Čítajú Chládek, Mišová, Rudolf, Šuppa, Vašut, Zeleňák

5. Harbison CT, Gordon DB, Lee TI, Rinaldi NJ, Macisaac KD, Danford TW et al. (2004). "Transcriptional regulatory code of a eukaryotic genome.". Nature 431 (7004): 99-104. doi:10.1038/nature02800. Čítajú Becza, Jariabka, Metohajrová, Mináriková, Novák, Vošček

7. Andronescu M, Fejes AP, Hutter F, Hoos HH, Condon A (2004). "A new algorithm for RNA secondary structure design.". J Mol Biol 336 (3): 607-24. doi:10.1016/j.jmb.2003.12.041. Čítajú Čanigová, Gafurov, Havelka, Komanová, Mudroch, Šandalová

8. Hernandez RD, Hubisz MJ, Wheeler DA, Smith DG, Ferguson B, Rogers J et al. (2007). "Demographic histories and patterns of linkage disequilibrium in Chinese and Indian rhesus macaques.". Science 316 (5822): 240-3. doi:10.1126/science.1140462. Čítajú Čierna, Kromka, Poláchová, D.Simeunovič, R.Simeunovič, Smolík

Nepoužité články

1. David M, Dursi LJ, Yao D, Boutros PC, Simpson JT (2016). "Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data". Bioinformatics.

3. Wapinski I, Pfeffer A, Friedman N, Regev A (2007). "Natural history and evolutionary principles of gene duplication in fungi". Nature 449 (7158): 54-61. doi:10.1038/nature06107. (pozrite aj Online supplement)

6. Heger, Andreas, and Liisa Holm (2003). "Exhaustive enumeration of protein domain families". Journal of molecular biology 328 (3): 749-67.