2-AIN-505, 2-AIN-251: Seminár z bioinformatiky (1) a (3)
Zima 2017
Rozvrh

Seminár:
Utorok 17:20, M-VIII
 
Vyučujúci:
Mgr. Tomáš Vinař, PhD M-163,
 
 
doc. Mgr. Broňa Brejová, PhD M-163,
 
 
Oznamy:
26.9. bude iba krátke nepovinné organizačné stretnutie, seminár začína od utorka 3.10.
 
Zoznam prezentácií:
3.10.2017
Broňa Brejová, Tomáš Vinař

Christoph Lippert, Riccardo Sabatini, M. Cyrus Maher, Eun Yong Kang, Seunghak Lee, Okan Arikan, Alena Harley, Axel Bernal, Peter Garst, Victor Lavrenko, Ken Yocum, Theodore Wong, Mingfu Zhu, Wen-Yun Yang, Chris Chang, Tim Lu, Charlie W. H. Lee, Barry Hicks, Smriti Ramakrishnan, Haibao Tang, Chao Xie, Jason Piper, Suzanne Brewerton, Yaron Turpaz, Amalio Telenti, Rhonda K. Roby, Franz J. Och, J. Craig Venter. Identification of individuals by trait prediction using whole-genome sequencingdata. Proceedings of the National Academy of Sciences of the United States of America, 2017. link

10.10.2017
Rasťo Rabatin

Avanti Shrikumar, Peyton Greenside, Anshul Kundaje. Learning Important Features Through Propagating Activation Differences. In ICML 2017, 2017. link

17.10.2017
Werner Krampl

Sheng Wang, Siqi Sun, Zhen Li, Renyu Zhang, Jinbo Xu. Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model. PLoS Comput Biol, 2017. link

24.10.2017
Dávid Simeunovič

Tanel Parnamaa, Leopold Parts. Accurate Classification of Protein Subcellular Localization from High-Throughput Microscopy Images Using Deep Learning. G3 (Bethesda), 2017. link

31.10.2017
Pamiatka zosnulých, seminár nebude
7.11.2017
Jaro Budiš

Sergey Koren, Brian P. Walenz, Konstantin Berlin, Jason R. Miller, Nicholas H. Bergman, Adam M. Phillippy. Canu: scalable and accurate long-read assembly via adaptive k-mer weighting andrepeat separation. Genome research, 2017. link

14.11.2017
Kubo Havelka

Robert Vaser, Ivan Sovic, Niranjan Nagarajan, Mile Sikic. Fast and accurate de novo genome assembly from long uncorrected reads. Genome research, 2017. link

21.11.2017
Matej Krajčovič

Aleksey V. Zimin, Daniela Puiu, Ming-Cheng Luo, Tingting Zhu, Sergey Koren, Guillaume Marcais, James A. Yorke, Jan Dvorak, Steven L. Salzberg. Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, aprogenitor of bread wheat, with the MaSuRCA mega-reads algorithm. Genome research, 2017. link

28.11.2017
Matúš Zeleňák

Heng Li. Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences. Bioinformatics, 2016. link

5.12.2017
Gabriela Loneková, Dávid Smoľak
12.12.2017
Rado Chládek
19.12.2017
Askar Gafurov