2-AIN-506, 2-AIN-252: Seminar in Bioinformatics (2), (4)
Leto 2023
Schedule

Time and place:
Wednesday 17:20, I-23 or online in MS Teams.
 
Instructors:
doc. Mgr. Tomáš Vinař, PhD M-163,
 
 
doc. Mgr. Broňa Brejová, PhD M-163,
 
 
Seminar schedule:
Short talk schedule
 
2023-02-15
Matej Fedor

Jens-Uwe Ulrich, Ahmad Lutfi, Kilian Rutzen, Bernhard Y. Renard. ReadBouncer: Precise and Scalable Adaptive Sampling for Nanopore Sequencing. Technical Report 2022.02.01.478636, bioRxiv, 2022. link

2023-02-22
no seminar
2023-03-01
Andrej Baláž

Travis Gagie, Gonzalo Navarro, Nicola Prezza. Fully functional suffix trees and optimal text searching in BWT-runs bounded space. Journal of the ACM, 2020. link

2023-03-08
Askar Gafurov
Fragmentomics
2023-03-15
Veronika Tordová

Lianrong Pu, Ron Shamir. 4CAC: 4-class classification of metagenome assemblies using machine learning and assembly graphs. bioRxiv 2023.01.20.524935, 2023. link

2023-03-22
Eva Herencsárová

Heng Li, Xiaowen Feng, Chong Chu. The design and construction of reference pangenome graphs with minigraph. Genome biology, 2020. link

2023-03-29
Martina Babinská

Julian Padro, Diego N. {De Panis}, Pierre Luisi, Hernan Dopazo, Sergio Szajnman, Esteban Hasson, Ignacio M. Soto. Ortholog genes from cactophilic Drosophila provide insight into human adaptation to hallucinogenic cacti. Sci Rep, 2022. link

2023-04-05
Dávid Barbora

Jun Ma, Manuel Cáceres, Leena Salmela, Veli Mäkinen, Alexandru I. Tomescu. Chaining for Accurate Alignment of Erroneous Long Reads to Acyclic Variation Graphs. Technical Report 2022.01.07.475257, bioRxiv, 2022. link

2023-04-12
Klára Sládečková

Tuukka Norri, Bastien Cazaux, Saska Donges, Daniel Valenzuela, Veli Makinen. Founder Reconstruction Enables Scalable and Seamless Pangenomic Analysis. Bioinformatics, 2021. link

2023-04-19
no seminar
2023-04-26
Alessia Petescia

Timour Baslan, Sam Kovaka, Fritz J. Sedlazeck, Yanming Zhang, Robert Wappel, Sha Tian, Scott W. Lowe, Sara Goodwin, Michael C. Schatz. High resolution copy number inference in cancer using short-molecule nanopore sequencing. Nucleic acids research, 2021. link

2023-05-03
Adrián Goga

Veli Mäkinen, Bastien Cazaux, Massimo Equi, Tuukka Norri, Alexandru I. Tomescu. Linear Time Construction of Indexable Founder Block Graphs. In WABI 2020, link

2023-05-10
Juraj Vašut

Marcel Martin,  Murray Patterson, Shilpa Garg, Sarah O Fischer, Nadia Pisanti,  Gunnar W Klau, Alexander Schöenhuth, Tobias Marschall. WhatsHap: fast and accurate read-based phasing. Technical Report 10.1101/085050, bioRxiv, 2016. link