2-AIN-506 a 2-AIN-252: Seminár z bioinformatiky (2) a (4)
Leto 2017
Rozvrh

Seminár:
Utorok 17:20, M-X
 
Vyučujúci:
Mgr. Tomáš Vinař, PhD M-163,
 
 
doc. Mgr. Broňa Brejová, PhD M-163,
 
 
Zoznam prezentácií:
21.2.2017
seminár nebude
28.2.2017
Broňa Brejová

Iain Mathieson, Iosif Lazaridis, Nadin Rohland, Swapan Mallick, Nick Patterson, Songul Alpaslan Roodenberg, Eadaoin Harney, Kristin Stewardson, Daniel Fernandes, Mario Novak, Kendra Sirak, Cristina Gamba, Eppie R. Jones, Bastien Llamas, Stanislav Dryomov, Joseph Pickrell, Juan Luis Arsuaga, Jose Maria Bermudez {de Castro}, Eudald Carbonell, Fokke Gerritsen, Aleksandr Khokhlov, Pavel Kuznetsov, Marina Lozano, Harald Meller, Oleg Mochalov, Vyacheslav Moiseyev, Manuel A. Rojo Guerra, Jacob Roodenberg, Josep Maria Verges, Johannes Krause, Alan Cooper, Kurt W. Alt, Dorcas Brown, David Anthony, Carles Lalueza-Fox, Wolfgang Haak, Ron Pinhasi, David Reich. Genome-wide patterns of selection in 230 ancient Eurasians. Nature, 2015. link

7.3.2017
seminár nebude
14.3.2017
Werner Krampl

Michael Worobey, Thomas D. Watts, Richard A. McKay, Marc A. Suchard, Timothy Granade, Dirk E. Teuwen, Beryl A. Koblin, Walid Heneine, Philippe Lemey, Harold W. Jaffe. 1970s and 'Patient 0' HIV-1 genomes illuminate early HIV/AIDS history in NorthAmerica. Nature, 2016. link

21.3.2017
Dávid Simeunovič

Eleftheria Palkopoulou, Swapan Mallick, Pontus Skoglund, Jacob Enk, Nadin Rohland, Heng Li, Ayca Omrak, Sergey Vartanyan, Hendrik Poinar, Anders Gotherstrom, David Reich, Love Dalen. Complete genomes reveal signatures of demographic and genetic declines in thewoolly mammoth. Current biology : CB, 2015. link

28.3.2017
Vlado Boža

Szymon Grabowski, Marcin Raniszewski. Sampling the suffix array with minimizers. In SPIRE 2015, 2015. link

4.4.2017

Richard Durbin. Efficient haplotype matching and storage using the positional Burrows-Wheelertransform (PBWT). Bioinformatics, 2014. link

11.4.2017
Jaro Budiš

Noam Kaplan, Job Dekker. High-throughput genome scaffolding from in vivo DNA interaction frequency. Nature biotechnology, 2013. link

18.4.2017
Veľká noc, seminár nebude
25.4.2017
Askar Gafurov

Grace X. Y. Zheng, Billy T. Lau, Michael Schnall-Levin, Mirna Jarosz, John M. Bell, Christopher M. Hindson, Sofia Kyriazopoulou-Panagiotopoulou, Donald A. Masquelier, Landon Merrill, Jessica M. Terry, Patrice A. Mudivarti, Paul W. Wyatt, Rajiv Bharadwaj, Anthony J. Makarewicz, Yuan Li, Phillip Belgrader, Andrew D. Price, Adam J. Lowe, Patrick Marks, Gerard M. Vurens, Paul Hardenbol, Luz Montesclaros, Melissa Luo, Lawrence Greenfield, Alexander Wong, David E. Birch, Steven W. Short, Keith P. Bjornson, Pranav Patel, Erik S. Hopmans, Christina Wood, Sukhvinder Kaur, Glenn K. Lockwood, David Stafford, Joshua P. Delaney, Indira Wu, Heather S. Ordonez, Susan M. Grimes, Stephanie Greer, Josephine Y. Lee, Kamila Belhocine, Kristina M. Giorda, William H. Heaton, Geoffrey P. McDermott, Zachary W. Bent, Francesca Meschi, Nikola O. Kondov, Ryan Wilson, Jorge A. Bernate, Shawn Gauby, Alex Kindwall, Clara Bermejo, Adrian N. Fehr, Adrian Chan, Serge Saxonov, Kevin D. Ness, Benjamin J. Hindson, Hanlee P. Ji. Haplotyping germline and cancer genomes with high-throughput linked-read sequencing. Nature biotechnology, 2016. link

Neil I Weisenfeld, Vijay Kumar, Preyas Shah, Deanna Church, David B Jaffe. Direct determination of diploid genome sequences. Technical Report 070425, bioRxiv, 2016. link

2.5.2017

Nicholas H. Putnam, Brendan O'Connell, Jonathan C. Stites, Brandon J. Rice, Andrew Fields, Paul D. Hartley, Charles W. Sugnet, David Haussler, Daniel S. Rokhsar, Richard E. Green. Chromosome-scale shotgun assembly using an in vitro method for long-range linkage. Technical Report arXiv:1502.05331, arXiv, 2015. link

9.5.2017
16.5.2017
23.5.2017
Michaela Šandalová

Kevin Weitemier, Shannon C. K. Straub, Richard C. Cronn, Mark Fishbein, Roswitha Schmickl, Angela McDonnell, Aaron Liston. Hyb-Seq: Combining target enrichment and genome skimming for plant phylogenomics. Appl Plant Sci, 2014. link