2-AIN-505, 2-AIN-251: Seminar in Bioinformatics (1), (3)
Winter 2023
List of papers
- Chirag Jain.
Coverage-preserving sparsification of overlap graphs for long-read assembly.
Bioinformatics,
39(3).
2023.
[ Abstract ] [ Download from publisher ] [ BibTeX ] [ PubMed ]
- Andrea Guarracino, Silvia Buonaiuto, Leonardo Gomes {de Lima}, Tamara Potapova, Arang Rhie, Sergey Koren, Boris Rubinstein, Christian Fischer, Jennifer L. Gerton, Adam M. Phillippy, Vincenza Colonna, Erik Garrison.
Recombination between heterologous human acrocentric chromosomes.
Nature,
617(7960):335-343.
2023.
[ Abstract ] [ Download from publisher ] [ BibTeX ] [ PubMed ]
- Shuvom Sadhuka, Daniel Fridman, Bonnie Berger, Hyunghoon Cho.
Assessing transcriptomic reidentification risks using discriminative sequence models.
Genome Research,
33(7):1101-1112.
2023.
[ Abstract ] [ Download from publisher ] [ BibTeX ] [ PubMed ]
- Jorge Miguel Silva, Diogo Pratas, Tania Caetano, Sergio Matos.
The complexity landscape of viral genomes.
Gigascience,
11.
2022.
[ Abstract ] [ Download from publisher ] [ BibTeX ] [ PubMed ]
- Ryan R. Wick, Kathryn E. Holt.
Polypolish: Short-read polishing of long-read bacterial genome assemblies.
PLoS Comput Biol,
18(1):e1009802.
2022.
[ Abstract ] [ BibTeX ] [ PubMed ]
- Gonzalo Navarro.
Indexing highly repetitive string collections, part I: repetitiveness measures.
ACM Computing Surveys,
2021.
[ Abstract ] [ Download from publisher ] [ BibTeX ]
- Yanrong Ji, Zhihan Zhou, Han Liu, Ramana V. Davuluri.
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome.
Bioinformatics,
37(15):2112-2120.
2021.
[ Abstract ] [ Download from publisher ] [ BibTeX ] [ PubMed ]
- Raffaella Rizzi, Stefano Beretta, Murray Patterson, Yuri Pirola, Marco Previtali, Gianluca Della Vedova, Paola Bonizzoni.
Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era.
Quantitative Biology,
7:278–292.
2019.
[ Abstract ] [ Download from publisher ] [ BibTeX ]
- Tri Dao, Albert Gu, Matthew Eichhorn, Atri Rudra, Christopher Re.
Learning Fast Algorithms for Linear Transforms Using Butterfly Factorizations.
Technical Report 1903.05895, arxiv,
2020.
[ Abstract ] [ Download from publisher ] [ BibTeX ]
- Peter Ralph, Graham Coop.
The geography of recent genetic ancestry across Europe.
PLoS biology,
11(5):e1001555.
2013.
[ Abstract ] [ BibTeX ] [ PubMed ]
