1-DAV-202 Data Management 2024/25

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Here is a preliminary plan of lectures for this year (the topics and their order may change):
 
Here is a preliminary plan of lectures for this year (the topics and their order may change):
  
{|
+
* '''2025-02-20'''
|-
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** ALL (BB): Introduction to the course · [https://goo.gl/forms/aKdhAAUZIGD80PrQ2 Survey],[[Contact]], [[Introduction]], [[Rules]], [[Connecting to server]], [[Editors]], [[Command-line basics]]
| 2023-02-13 || (BB/TV) || ALL || Introduction to the course || [https://goo.gl/forms/aKdhAAUZIGD80PrQ2 Survey], [[Contact]], [[Introduction]], [[Rules]]
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** ALL (BB): Introduction to Perl · [[Lperl|Lecture]], [[HWperl|Homework]]
|-
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* '''2025-02-27'''
| || || || Introduction to Perl || [[Lperl|Lecture]], [[HWperl|Homework]], [[Connecting to server]], [[Editors]], [[Command-line basics]]
+
** ALL (BB): Command-line tools, Perl one-liners <!-- · [[Lbash|Lecture]], [[HWbash|Homework]] -->
|-
+
* '''2025-03-06'''
| 2023-02-20 || (BB) || ALL || Command-line tools, Perl one-liners || [[Lbash|Lecture]], [[HWbash|Homework]]
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** ALL (TV): Job scheduling and make <!-- · [[Lmake|Lecture]], [[HWmake|Homework]] -->
|-
+
* '''2025-03-13'''
| 2023-02-27 || (BB) || ALL || Job scheduling and make || [[Lmake|Lecture]], [[HWmake|Homework]]
+
** ALL (TV): SQL (and Python) for beginners <!-- · [[Project]], [[Lsql|Lecture]], [[Python]], [[HWsql|Homework]] -->
|-
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* '''2025-03-20'''
| 2023-03-06 || (BB) || ALL || Python and SQL for beginners || [[Lpython|Lecture]], [[HWpython|Homework]]
+
**  INF/DAV (VB): Python, web crawling, HTML parsing, sqlite3 <!-- · [[Lweb|Lecture]], [[HWweb|Homework]], [[Screen]]-->
|-
+
** BIN (TV): Bioinformatics 1 (sequencing and genome assembly) <!-- · [[Lbioinf1|Lecture]], [[HWbioinf1|Homework]] -->
| 2023-03-13 || (VB) || INF/DAV || Python, web crawling, HTML parsing, sqlite3 || [[Lweb|Lecture]], [[HWweb|Homework]]
+
* '''2025-03-27'''
|-
+
* '''2025-04-02'''
| || (BB) || BIN || Bioinformatics 1 (sequencing and genome assembly) || [[Lbioinf1|Lecture]], [[HWbioinf1|Homework]]
+
** INF/DAV (VB): Text data processing, flask <!-- · [[Lflask|Lecture]], [[HWflask|Homework]] -->
|-
+
** BIN (TV): Bioinformatics 2 (gene finding, RNA-seq) <!-- · [[Lbioinf2|Lecture]], [[HWbioinf2|Homework]] -->
| 2023-03-20 || (VB) || INF/DAV || Text data processing, flask || [[Lflask|Lecture]], [[HWflask|Homework]]
+
* '''2025-04-10'''
|-
+
** INF/DAV (VB): Data visualization in JavaScript <!-- · [[Ljavascript|Lecture]], [[HWjavascript|Homework]] -->
| || (TV) || BIN || Bioinformatics 2 (gene finding, RNA-seq) || [[Lbioinf2|Lecture]], [[HWbioinf2|Homework]]
+
** BIN (TV): Bioinformatics 3 (genome variants) <!-- · [[Lbioinf3|Lecture]], [[HWbioinf3|Homework]] -->
|-
+
<!-- ** [[Project#Project_proposal|Project proposals]] due Friday April 12 -->
| 2023-03-27 || (VB) || INF/DAV || Data visualization in JavaScript || [[Ljavascript|Lecture]], [[HWjavascript|Homework]]
+
* 2025-04-17 Easter
|-
+
* '''2025-04-24'''
| || (TV) || BIN || Bioinformatics 3 (genome variants) || [[Lbioinf3|Lecture]], [[HWbioinf3|Homework]]
+
** ALL (BB): Python + C++ <!-- · [[Lcpp|Lecture]], [[HWcpp|Homework]] -->
|-
+
* 2024-05-01 Holiday
| 2023-04-03 || (BB) || ALL || R, part 1 || [[Lr1|Lecture]], [[HWr1|Homework]]
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* 2025-05-08 Holiday
|-
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* '''2025-05-15'''
| || || || [[Project#Project_proposal|Project proposals]] due Wednesday April 5
+
** ALL (VB): Cloud computing <!-- · [[Lcloud|Lecture]], [[HWcloud|Homework]] -->
|-
+
* 2025-05-22 No lecture
| 2023-04-10 || || || Easter
+
 
|-
+
 
| 2023-04-17 ||(VB) || ALL || Cloud computing || [[Lcloud|Lecture]], [[HWcloud|Homework]]
+
Optional materials:
|-
+
* If you are interested in R language, you can look at these lectures and homeworks. Files for the tasks are available on the server. However do not submit these homeworks.
| 2023-04-24 || (BB) || ALL || R, part 2 || <!-- [[Lr2|Lecture]], [[HWr2|Homework]] -->
+
** [[Lr1]], [[HWr1]] tutorial to R and basic plotting
|-
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** [[Lr2]], [[HWr2]] statistical tests in R
| 2023-05-01 || || || Holiday
 
|-
 
| 2023-05-08 || || || Holiday
 
|}
 

Latest revision as of 21:22, 17 February 2025

Here is a preliminary plan of lectures for this year (the topics and their order may change):

  • 2025-02-20
  • 2025-02-27
    • ALL (BB): Command-line tools, Perl one-liners
  • 2025-03-06
    • ALL (TV): Job scheduling and make
  • 2025-03-13
    • ALL (TV): SQL (and Python) for beginners
  • 2025-03-20
    • INF/DAV (VB): Python, web crawling, HTML parsing, sqlite3
    • BIN (TV): Bioinformatics 1 (sequencing and genome assembly)
  • 2025-03-27
  • 2025-04-02
    • INF/DAV (VB): Text data processing, flask
    • BIN (TV): Bioinformatics 2 (gene finding, RNA-seq)
  • 2025-04-10
    • INF/DAV (VB): Data visualization in JavaScript
    • BIN (TV): Bioinformatics 3 (genome variants)
  • 2025-04-17 Easter
  • 2025-04-24
    • ALL (BB): Python + C++
  • 2024-05-01 Holiday
  • 2025-05-08 Holiday
  • 2025-05-15
    • ALL (VB): Cloud computing
  • 2025-05-22 No lecture


Optional materials:

  • If you are interested in R language, you can look at these lectures and homeworks. Files for the tasks are available on the server. However do not submit these homeworks.
    • Lr1, HWr1 tutorial to R and basic plotting
    • Lr2, HWr2 statistical tests in R