1-DAV-202 Data Management 2024/25

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* '''2025-02-20'''  
 
* '''2025-02-20'''  
** ALL (BB): Introduction to the course · <!--[https://goo.gl/forms/aKdhAAUZIGD80PrQ2 Survey],--> [[Contact]], [[Introduction]], [[Rules]], [[Connecting to server]], [[Editors]], [[Command-line basics]]
+
** ALL (BB): Introduction to the course · [https://goo.gl/forms/aKdhAAUZIGD80PrQ2 Survey],[[Contact]], [[Introduction]], [[Rules]], [[Connecting to server]], [[Editors]], [[Command-line basics]]
<!--
 
 
** ALL (BB): Introduction to Perl · [[Lperl|Lecture]], [[HWperl|Homework]]
 
** ALL (BB): Introduction to Perl · [[Lperl|Lecture]], [[HWperl|Homework]]
 
* '''2025-02-27'''  
 
* '''2025-02-27'''  
** ALL (BB): Command-line tools, Perl one-liners · [[Lbash|Lecture]], [[HWbash|Homework]]
+
** ALL (BB): Command-line tools, Perl one-liners <!-- · [[Lbash|Lecture]], [[HWbash|Homework]] -->
 
* '''2025-03-06'''
 
* '''2025-03-06'''
** ALL (TV): Job scheduling and make · [[Lmake|Lecture]], [[HWmake|Homework]]
+
** ALL (TV): Job scheduling and make <!-- · [[Lmake|Lecture]], [[HWmake|Homework]] -->
 
* '''2025-03-13'''  
 
* '''2025-03-13'''  
** ALL (TV): SQL (and Python) for beginners · [[Project]], [[Lsql|Lecture]], [[Python]], [[HWsql|Homework]]  
+
** ALL (TV): SQL (and Python) for beginners <!-- · [[Project]], [[Lsql|Lecture]], [[Python]], [[HWsql|Homework]] -->
 
* '''2025-03-20'''
 
* '''2025-03-20'''
**  INF/DAV (VB): Python, web crawling, HTML parsing, sqlite3 · [[Lweb|Lecture]], [[HWweb|Homework]], [[Screen]]
+
**  INF/DAV (VB): Python, web crawling, HTML parsing, sqlite3 <!-- · [[Lweb|Lecture]], [[HWweb|Homework]], [[Screen]]-->
** BIN (TV): Bioinformatics 1 (sequencing and genome assembly) · [[Lbioinf1|Lecture]], [[HWbioinf1|Homework]]
+
** BIN (TV): Bioinformatics 1 (sequencing and genome assembly) <!-- · [[Lbioinf1|Lecture]], [[HWbioinf1|Homework]] -->
 
* '''2025-03-27'''
 
* '''2025-03-27'''
 
* '''2025-04-02'''  
 
* '''2025-04-02'''  
** INF/DAV (VB): Text data processing, flask · [[Lflask|Lecture]], [[HWflask|Homework]]
+
** INF/DAV (VB): Text data processing, flask <!-- · [[Lflask|Lecture]], [[HWflask|Homework]] -->
** BIN (TV): Bioinformatics 2 (gene finding, RNA-seq) · [[Lbioinf2|Lecture]], [[HWbioinf2|Homework]]  
+
** BIN (TV): Bioinformatics 2 (gene finding, RNA-seq) <!-- · [[Lbioinf2|Lecture]], [[HWbioinf2|Homework]] -->
 
* '''2025-04-10'''
 
* '''2025-04-10'''
** INF/DAV (BB): Data visualization in JavaScript · [[Ljavascript|Lecture]], [[HWjavascript|Homework]]
+
** INF/DAV (VB): Data visualization in JavaScript <!-- · [[Ljavascript|Lecture]], [[HWjavascript|Homework]] -->
** BIN (TV): Bioinformatics 3 (genome variants) · [[Lbioinf3|Lecture]], [[HWbioinf3|Homework]]
+
** BIN (TV): Bioinformatics 3 (genome variants) <!-- · [[Lbioinf3|Lecture]], [[HWbioinf3|Homework]] -->
** [[Project#Project_proposal|Project proposals]] due Friday April 12
+
<!-- ** [[Project#Project_proposal|Project proposals]] due Friday April 12 -->
* 2025-04-17 Student Research Conference
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* 2025-04-17 Easter
* 2025-04-24 No lecture
+
* '''2025-04-24'''  
* '''2024-05-01'''  
+
** ALL (BB): Python + C++ <!-- · [[Lcpp|Lecture]], [[HWcpp|Homework]] -->
** ALL (BB): Python + C++ · [[Lcpp|Lecture]], [[HWcpp|Homework]]
+
* 2024-05-01 Holiday
* '''2025-05-08'''
+
* 2025-05-08 Holiday
** ALL (VB): Cloud computing · [[Lcloud|Lecture]], [[HWcloud|Homework]]
+
* '''2025-05-15'''
* 2025-05-15 No lecture
+
** ALL (VB): Cloud computing <!-- · [[Lcloud|Lecture]], [[HWcloud|Homework]] -->
 
* 2025-05-22 No lecture
 
* 2025-05-22 No lecture
  
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** [[Lr1]], [[HWr1]] tutorial to R and basic plotting
 
** [[Lr1]], [[HWr1]] tutorial to R and basic plotting
 
** [[Lr2]], [[HWr2]] statistical tests in R
 
** [[Lr2]], [[HWr2]] statistical tests in R
-->
 

Latest revision as of 21:22, 17 February 2025

Here is a preliminary plan of lectures for this year (the topics and their order may change):

  • 2025-02-20
  • 2025-02-27
    • ALL (BB): Command-line tools, Perl one-liners
  • 2025-03-06
    • ALL (TV): Job scheduling and make
  • 2025-03-13
    • ALL (TV): SQL (and Python) for beginners
  • 2025-03-20
    • INF/DAV (VB): Python, web crawling, HTML parsing, sqlite3
    • BIN (TV): Bioinformatics 1 (sequencing and genome assembly)
  • 2025-03-27
  • 2025-04-02
    • INF/DAV (VB): Text data processing, flask
    • BIN (TV): Bioinformatics 2 (gene finding, RNA-seq)
  • 2025-04-10
    • INF/DAV (VB): Data visualization in JavaScript
    • BIN (TV): Bioinformatics 3 (genome variants)
  • 2025-04-17 Easter
  • 2025-04-24
    • ALL (BB): Python + C++
  • 2024-05-01 Holiday
  • 2025-05-08 Holiday
  • 2025-05-15
    • ALL (VB): Cloud computing
  • 2025-05-22 No lecture


Optional materials:

  • If you are interested in R language, you can look at these lectures and homeworks. Files for the tasks are available on the server. However do not submit these homeworks.
    • Lr1, HWr1 tutorial to R and basic plotting
    • Lr2, HWr2 statistical tests in R