1-DAV-202 Data Management 2023/24
Previously 2-INF-185 Data Source Integration

Materials · Introduction · Rules · Contact
· Grades from marked homeworks are on the server in file /grades/userid.txt
· Dates of project submission and oral exams:
Early: submit project May 24 9:00am, oral exams May 27 1:00pm (limit 5 students).
Otherwise submit project June 11, 9:00am, oral exams June 18 and 21 (estimated 9:00am-1:00pm, schedule will be published before exam).
Sign up for one the exam days in AIS before June 11.
Remedial exams will take place in the last week of the exam period. Beware, there will not be much time to prepare a better project. Projects should be submitted as homeworks to /submit/project.
· Cloud homework is due on May 20 9:00am.


Difference between revisions of "Lcloud"

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We will be using Apache Beam in this session (because Pyspark stinks).
 
We will be using Apache Beam in this session (because Pyspark stinks).
  
==Template==
+
==Running locally==
  
 
If you want to use your own machine, please install packages with <tt>pip install 'apache-beam[gcp]'</tt>
 
If you want to use your own machine, please install packages with <tt>pip install 'apache-beam[gcp]'</tt>
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This job downloads one file from cloud storage and stores it into file starting with name out. You can change the name if you want.
 
This job downloads one file from cloud storage and stores it into file starting with name out. You can change the name if you want.
 +
This is very useful for any debugging.
 +
 +
==Running in Dataflow==
 +
 +
First we need to create service account (account for machine). Run following commands:
 +
 +
* <tt>gcloud projects list</tt>
 +
* This will show you the project-id, you will need it.
 +
  
 
You can run it in the cloud on the whole dataset as follows:
 
You can run it in the cloud on the whole dataset as follows:

Revision as of 21:48, 2 May 2022

Today we will work with Google Cloud (GCP), which is a cloud computing platform. GCP contains many services (virtual machines, kubernetes, storage, databases, ...). We are mainly interested in Dataflow and Storage. Dataflow allows highly parallel computation on large datasets. We will use an educational account which gives you a certain amount of resources for free.

Basic setup

You should have received instructions how to create GCloud account via MS Teams. You should be able to login to google cloud console. (TODO picture).

Now:

  • Login to some Linux machine (ideally vyuka)
  • If the machine is not vyuka, install gcloud command line package (I recommend via snap: [1]).
  • Run gcloud init --console-only
  • Follow instructions (copy link to browser, login and then copy code back to console).

Input files and data storage

Today we will use Gcloud storage to store input files and outputs. Think of it as some limited external disk (more like gdrive, than dropbox). You can just upload and download files, no random access to the middle of the file.

Run the following two commands to check if you can see the "bucket" (data storage) associated with this lecture:

# the following command should give you a big list of files
gsutil ls gs://mad-2022-public/

# this command downloads one file from the bucket
gsutil cp gs://mad-2022-public/splitaa splitaa

# the following command prints the file in your console 
# (no need to do this).
gsutil cat gs://mad-2022-public/splitaa

You should also create your own bucket (storage area). Pick your own name, must be globally unique:

gsutil mb gs://mysuperawesomebucket

Apache beam and Dataflow

We will be using Apache Beam in this session (because Pyspark stinks).

Running locally

If you want to use your own machine, please install packages with pip install 'apache-beam[gcp]'

You are given basic template with comments in /tasks/cloud/example_job.py

You can run it locally as follows:

python3 example_job.py --output out

This job downloads one file from cloud storage and stores it into file starting with name out. You can change the name if you want. This is very useful for any debugging.

Running in Dataflow

First we need to create service account (account for machine). Run following commands:

  • gcloud projects list
  • This will show you the project-id, you will need it.


You can run it in the cloud on the whole dataset as follows:

python3 example_job.py -r emr --region us-east-1 s3://idzbucket2 \
  --num-core-instances 4 -o s3://<your bucket>/<some directory>

For testing we recommend using a smaller sample as follows:

python3 example_job.py -r emr --region us-east-1 s3://idzbucket2/splita* \
  --num-core-instances 4 -o  s3://<your bucket>/<some directory>

Other useful commands

You can download output as follows:

# list of files
aws s3 ls s3://<your bucket>/<some directory>/
# download
aws s3 cp s3://<your bucket>/<some directory>/ . --recursive

If you want to watch progress:

  • Click on AWS Console button workbench (vocareum).
  • Set region (top right) to N. Virginia (us-east-1).
  • Click on services, then EMR.
  • Click on the job, which is running, then Steps, view logs, syslog.