2-AIN-505, 2-AIN-251: Seminár z bioinformatiky (1) a (3)
Zima 2017
Rozvrh

Seminár:
Utorok 17:20, M-VIII
Vyučujúci:
Mgr. Tomáš Vinař, PhD	M-163,

doc. Mgr. Broňa Brejová, PhD	M-163,

Oznamy:
26.9. bude iba krátke nepovinné organizačné stretnutie, seminár začína od utorka 3.10.
Zoznam prezentácií:

3.10.2017 Broňa Brejová, Tomáš Vinař	Christoph Lippert, Riccardo Sabatini, M. Cyrus Maher, Eun Yong Kang, Seunghak Lee, Okan Arikan, Alena Harley, Axel Bernal, Peter Garst, Victor Lavrenko, Ken Yocum, Theodore Wong, Mingfu Zhu, Wen-Yun Yang, Chris Chang, Tim Lu, Charlie W. H. Lee, Barry Hicks, Smriti Ramakrishnan, Haibao Tang, Chao Xie, Jason Piper, Suzanne Brewerton, Yaron Turpaz, Amalio Telenti, Rhonda K. Roby, Franz J. Och, J. Craig Venter. Identification of individuals by trait prediction using whole-genome sequencingdata. Proceedings of the National Academy of Sciences of the United States of America, 2017. link
10.10.2017 Rasťo Rabatin	Avanti Shrikumar, Peyton Greenside, Anshul Kundaje. Learning Important Features Through Propagating Activation Differences. In ICML 2017, 2017. link
17.10.2017 Werner Krampl	Sheng Wang, Siqi Sun, Zhen Li, Renyu Zhang, Jinbo Xu. Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model. PLoS Comput Biol, 2017. link
24.10.2017 Dávid Simeunovič	Tanel Parnamaa, Leopold Parts. Accurate Classification of Protein Subcellular Localization from High-Throughput Microscopy Images Using Deep Learning. G3 (Bethesda), 2017. link
31.10.2017 Pamiatka zosnulých, seminár nebude
7.11.2017 Jaro Budiš	Sergey Koren, Brian P. Walenz, Konstantin Berlin, Jason R. Miller, Nicholas H. Bergman, Adam M. Phillippy. Canu: scalable and accurate long-read assembly via adaptive k-mer weighting andrepeat separation. Genome research, 2017. link
14.11.2017 Kubo Havelka	Robert Vaser, Ivan Sovic, Niranjan Nagarajan, Mile Sikic. Fast and accurate de novo genome assembly from long uncorrected reads. Genome research, 2017. link
21.11.2017 Matej Krajčovič	Aleksey V. Zimin, Daniela Puiu, Ming-Cheng Luo, Tingting Zhu, Sergey Koren, Guillaume Marcais, James A. Yorke, Jan Dvorak, Steven L. Salzberg. Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, aprogenitor of bread wheat, with the MaSuRCA mega-reads algorithm. Genome research, 2017. link
28.11.2017 Matúš Zeleňák	Heng Li. Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences. Bioinformatics, 2016. link
5.12.2017 Gabriela Loneková, Dávid Smoľak	Catia Pinto, Diogo Pinho, Remy Cardoso, Valeria Custodio, Joana Fernandes, Susana Sousa, Miguel Pinheiro, Conceicao Egas, Ana C. Gomes. Wine fermentation microbiome: a landscape from different Portuguese wineappellations. Front Microbiol, 2015. link
12.12.2017 Rado Chládek	Adam M. Novak et al.. Genome Graphs. Technical Report 101378, bioRxiv, 2-17. link
19.12.2017 Askar Gafurov	Jarno Alanko, Fabio Cunial, Djamal Belazzougui, Veli Makinen. A framework for space-efficient read clustering in metagenomic samples. BMC bioinformatics, 2017. link