Seminár: | ||
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Utorok 17:20, M-VIII | ||
Vyučujúci: | ||
doc. Mgr. Tomáš Vinař, PhD | M-163, | |
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doc. Mgr. Broňa Brejová, PhD | M-163, | |
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Oznamy: | ||
Seminár začína 22.9.2020 prvou prezentáciou. Semináre budú prebiehať online na linke https://meet.google.com/czn-mpfg-ipx | ||
Zoznam prezentácií: |
22.9.2020 Tomáš Vinař | Mikko Rautiainen, Tobias Marschall. MBG: Minimizer-based Sparse de Bruijn Graph Construction. Technical Report doi:10.1101/2020.09.18.303156v1, bioRxiv, 2020. link |
29.9.2020 Aďo Goga | Mikhail Kolmogorov, Jeffrey Yuan, Yu Lin, Pavel A. Pevzner. Assembly of long, error-prone reads using repeat graphs. Nature biotechnology, 2019. link |
6.10.2020 Dominika Szabová | Mitchell R. Vollger, Philip C. Dishuck, Melanie Sorensen, AnneMarie E. Welch, Vy Dang, Max L. Dougherty, Tina A. Graves-Lindsay, Richard K. Wilson, Mark J. P. Chaisson, Evan E. Eichler. Long-read sequence and assembly of segmental duplications. Nature methods, 2019. link |
13.10.2020 Askar Gafurov | Robert C. Edgar. Syncmers are more sensitive than minimizers for selecting conserved k-mers in biological sequences. Technical Report doi:10.1101/2020.09.29.319095, bioRxiv, 2020. link |
20.10.2020 Peter Perešíni | Hannah Brown, Lei Zuo, Dan Gusfield. Comparing Integer Linear Programming to SAT-Solving for Hard Problems in Computational and Systems Biology. In AlCoB 2020: Algorithms for Computational Biology, 2020. link |
27.10.2020 Samo Molčan | Benjamin A. Logsdon, Jason Mezey. Gene expression network reconstruction by convex feature selection whenincorporating genetic perturbations. PLoS Comput Biol, 2010. link |
3.11.2020 Dominika Mihálová | Katelyn McNair, Carol Zhou, Elizabeth A. Dinsdale, Brian Souza, Robert A. Edwards. PHANOTATE: a novel approach to gene identification in phage genomes. Bioinformatics, 2019. link |
10.11.2020 Andrej Baláž | Jie Ren, Nathan A. Ahlgren, Yang Young Lu, Jed A. Fuhrman, Fengzhu Sun. VirFinder: a novel k-mer based tool for identifying viral sequences fromassembled metagenomic data. Microbiome, 2017. link |
17.11.2020 seminár nebude | |
24.11.2020 Lukáš Kiss | Cynthia Maria Chibani, Anton Farr, Sandra Klama, Sascha Dietrich, Heiko Liesegang. Classifying the Unclassified: A Phage Classification Method. Viruses, 2019. link |
1.12.2020 Tomáš Jarábek | Jordan M Eizenga, Adam M Novak, Emily Kobayashi, Flavia Villani, Cecilia Cisar, Simon Heumos, Glenn Hickey, Vincenza Colonna, Benedict Paten, Erik Garrison. Efficient dynamic variation graphs. link |
8.12.2020 Jozef Sitarčík | Jouni Siren, Erik Garrison, Adam M. Novak, Benedict Paten, Richard Durbin. Haplotype-aware graph indexes. Bioinformatics, 2020. link |
15.12.2020 Broňa Brejová | Hannes P. Eggertsson, Snaedis Kristmundsdottir, Doruk Beyter, Hakon Jonsson, Astros Skuladottir, Marteinn T. Hardarson, Daniel F. Gudbjartsson, Kari Stefansson, Bjarni V. Halldorsson, Pall Melsted. GraphTyper2 enables population-scale genotyping of structural variation usingpangenome graphs. Nat Commun, 2019. link Hannes P. Eggertsson, Hakon Jonsson, Snaedis Kristmundsdottir, Eirikur Hjartarson, Birte Kehr, Gisli Masson, Florian Zink, Kristjan E. Hjorleifsson, Aslaug Jonasdottir, Adalbjorg Jonasdottir, Ingileif Jonsdottir, Daniel F. Gudbjartsson, Pall Melsted, Kari Stefansson, Bjarni V. Halldorsson. Graphtyper enables population-scale genotyping using pangenome graphs. Nature genetics, 2017. link |