P50861 y-mtPTM: Yeast Mitochondrial PTM Database

Basic Information

Name	6,7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (EC 2.5.1.78)
Uniprot ID	P50861
Systematic gene name	YOL143C
Standard gene name	RIB4
Gene names	RIB4 YOL143C
Description from SGD	YOL143C RIB4 SGDID:S000005503, Chr XV from 55104-54595, Genome Release 64-3-1, reverse complement, Verified ORF, "Lumazine synthase (DMRL synthase); catalyzes synthesis of immediate precursor to riboflavin; DMRL synthase stands for 6,7-dimethyl-8-ribityllumazine synthase"
Protein length	169
Download	sequence (fasta, from Uniprot), modifications (csv format)
Database links	Uniprot, SGD, TheCellVision.org, FungiDB

Sequence

MAVKGLGKPD QVYDGS KIRV GIIHARWNRV IIDALVKGAI ERMASLGVEE
NNIIIETVPG SYELPWGTKR FVDRQAKLGK PLDVVIPIGV LIKGSTMHFE
YISDSTTHAL MNLQEKVDMP VIFGLLTCMT EEQALARAGI DEAHSMHNHG
EDWGAAAVEM AVKFGKNAF

Legend

X Phoshorylation
X K-acetylation

Structure

Structure visualized

Loading structure by GLmol written by biochem_fan. The structure was downloaded from the AlphaFold Protein Structure Database. id="glmol01_src" style="display: none;"> 8.790 -21.984 -13.417 1.00 38.82 N 7.466 -21.330 -13.380 1.00 38.82 C 7.530 -20.336 -12.228 1.00 38.82 C 7.596 -20.783 -11.093 1.00 38.82 O 6.365 -22.403 -13.204 1.00 38.82 C 5.035 -22.035 -13.865 1.00 38.82 C 3.698 -23.229 -13.565 1.00 38.82 S 4.225 -24.689 -14.511 1.00 38.82 C 7.706 -19.036 -12.488 1.00 48.43 N 7.725 -18.054 -11.401 1.00 48.43 C 6.346 -18.087 -10.736 1.00 48.43 C 5.342 -17.979 -11.439 1.00 48.43 O 8.075 -16.666 -11.955 1.00 48.43 C 6.285 -18.320 -9.427 1.00 43.82 N 5.031 -18.208 -8.677 1.00 43.82 C 4.552 -16.767 -8.866 1.00 43.82 C 5.216 -15.834 -8.425 1.00 43.82 O 5.249 -18.581 -7.197 1.00 43.82 C 3.969 -18.411 -6.377 1.00 43.82 C 5.702 -20.044 -7.071 1.00 43.82 C 3.469 -16.584 -9.630 1.00 66.61 N 2.987 -15.271 -10.092 1.00 66.61 C 2.185 -14.506 -9.026 1.00 66.61 C 1.531 -13.549 -9.383 1.00 66.61 O 2.207 -15.398 -11.426 1.00 66.61 C 3.069 -15.733 -12.657 1.00 66.61 C 2.248 -15.550 -13.947 1.00 66.61 C 3.096 -15.755 -15.209 1.00 66.61 C 2.344 -15.361 -16.431 1.00 66.61 N1+ 2.209 -14.897 -7.753 1.00 60.54 N 1.403 -14.284 -6.685 1.00 60.54 C 0.820 -15.332 -5.737 1.00 60.54 C 1.218 -16.497 -5.799 1.00 60.54 O -0.131 -14.931 -4.883 1.00 64.92 N -0.778 -15.809 -3.887 1.00 64.92 C -1.554 -16.986 -4.513 1.00 64.92 C -1.847 -17.966 -3.834 1.00 64.92 O -1.714 -14.960 -2.998 1.00 64.92 C -0.996 -14.042 -1.989 1.00 64.92 C -1.993 -13.074 -1.352 1.00 64.92 C -0.328 -14.840 -0.865 1.00 64.92 C -1.858 -16.926 -5.813 1.00 67.05 N -2.684 -17.927 -6.481 1.00 67.05 C -4.163 -17.752 -6.133 1.00 67.05 C -4.637 -16.634 -5.945 1.00 67.05 O -4.921 -18.854 -6.100 1.00 70.94 N -6.326 -18.816 -5.671 1.00 70.94 C -6.385 -18.853 -4.138 1.00 70.94 C -5.680 -19.685 -3.571 1.00 70.94 O -7.131 -19.978 -6.268 1.00 70.94 C -7.311 -19.829 -7.785 1.00 70.94 C -8.204 -20.948 -8.331 1.00 70.94 C -8.400 -20.770 -9.840 1.00 70.94 C -9.298 -21.815 -10.391 1.00 70.94 N1+ -7.234 -18.030 -3.495 1.00 69.07 N -7.545 -18.186 -2.077 1.00 69.07 C -7.940 -19.631 -1.750 1.00 69.07 C -8.577 -20.303 -2.567 1.00 69.07 O -8.693 -17.210 -1.798 1.00 69.07 C -8.509 -16.131 -2.861 1.00 69.07 C -7.989 -16.922 -4.059 1.00 69.07 C -7.566 -20.098 -0.562 1.00 79.32 N -7.915 -21.422 -0.033 1.00 79.32 C -9.413 -21.548 0.288 1.00 79.32 C -9.984 -22.637 0.209 1.00 79.32 O -7.044 -21.719 1.205 1.00 79.32 C -7.193 -20.726 2.375 1.00 79.32 C -7.568 -19.553 2.133 1.00 79.32 O -6.887 -21.122 3.520 1.00 79.32 O1- -10.059 -20.422 0.586 1.00 84.00 N -11.490 -20.307 0.839 1.00 84.00 C -12.035 -18.945 0.389 1.00 84.00 C -11.295 -18.035 0.013 1.00 84.00 O -11.765 -20.585 2.327 1.00 84.00 C -11.040 -19.615 3.269 1.00 84.00 C -11.273 -19.951 4.735 1.00 84.00 C -11.653 -18.990 5.546 1.00 84.00 N -11.164 -21.080 5.182 1.00 84.00 O -13.360 -18.801 0.420 1.00 86.91 N -14.024 -17.516 0.181 1.00 86.91 C -14.053 -16.731 1.491 1.00 86.91 C -14.602 -17.207 2.482 1.00 86.91 O -15.436 -17.709 -0.403 1.00 86.91 C -16.098 -16.360 -0.710 1.00 86.91 C -15.384 -18.512 -1.713 1.00 86.91 C -13.469 -15.534 1.486 1.00 92.47 N -13.501 -14.600 2.611 1.00 92.47 C -14.549 -13.512 2.353 1.00 92.47 C -14.576 -12.937 1.266 1.00 92.47 O -12.101 -14.011 2.837 1.00 92.47 C -11.044 -15.045 3.181 1.00 92.47 C -10.985 -15.562 4.488 1.00 92.47 C -10.129 -15.498 2.208 1.00 92.47 C -10.023 -16.534 4.815 1.00 92.47 C -9.174 -16.485 2.533 1.00 92.47 C -9.123 -17.013 3.838 1.00 92.47 C -8.236 -17.992 4.168 1.00 92.47 O -15.402 -13.241 3.344 1.00 94.48 N -16.442 -12.206 3.287 1.00 94.48 C -15.949 -10.914 3.955 1.00 94.48 C -15.802 -10.840 5.175 1.00 94.48 O -17.734 -12.739 3.933 1.00 94.48 C -18.870 -11.706 3.998 1.00 94.48 C -18.752 -10.616 3.393 1.00 94.48 O -19.875 -11.985 4.684 1.00 94.48 O1- -15.688 -9.894 3.139 1.00 96.53 N -15.247 -8.570 3.570 1.00 96.53 C -16.377 -7.601 3.937 1.00 96.53 C -16.091 -6.452 4.256 1.00 96.53 O -17.650 -8.004 3.920 1.00 96.25 N -18.785 -7.081 4.133 1.00 96.25 C -18.759 -6.312 5.456 1.00 96.25 C -19.298 -5.211 5.547 1.00 96.25 O -20.110 -7.833 4.001 1.00 96.25 C -20.189 -8.888 4.943 1.00 96.25 O -18.101 -6.858 6.483 1.00 94.85 N -18.045 -6.264 7.829 1.00 94.85 C -16.731 -5.571 8.166 1.00 94.85 C -16.618 -5.052 9.273 1.00 94.85 O -18.373 -7.332 8.875 1.00 94.85 C -19.790 -7.880 8.687 1.00 94.85 C -20.095 -8.878 9.800 1.00 94.85 C -21.471 -9.488 9.551 1.00 94.85 C -21.757 -10.540 10.552 1.00 94.85 N1+ -15.744 -5.591 7.271 1.00 97.01 N -14.425 -5.035 7.578 1.00 97.01 C -14.318 -3.588 7.116 1.00 97.01 C -14.865 -3.195 6.084 1.00 97.01 O -13.259 -5.909 7.070 1.00 97.01 C -13.052 -5.796 5.548 1.00 97.01 C -13.444 -7.369 7.526 1.00 97.01 C -11.813 -6.519 5.039 1.00 97.01 C -13.539 -2.804 7.856 1.00 98.12 N -13.175 -1.438 7.514 1.00 98.12 C -11.689 -1.334 7.219 1.00 98.12 C -10.846 -1.609 8.071 1.00 98.12 O -13.658 -0.521 8.631 1.00 98.12 C -13.691 0.913 8.119 1.00 98.12 C -14.375 1.799 9.144 1.00 98.12 C -14.254 3.207 8.752 1.00 98.12 N -13.332 4.034 9.187 1.00 98.12 C -12.328 3.635 9.901 1.00 98.12 N1+ -13.437 5.304 8.942 1.00 98.12 N -11.363 -0.897 6.010 1.00 98.69 N -10.001 -0.921 5.479 1.00 98.69 C -9.453 0.489 5.337 1.00 98.69 C -10.116 1.392 4.832 1.00 98.69 O -9.921 -1.685 4.146 1.00 98.69 C -8.448 -1.797 3.717 1.00 98.69 C -10.564 -3.074 4.273 1.00 98.69 C -8.215 0.686 5.778 1.00 98.79 N -7.456 1.891 5.475 1.00 98.79 C -6.527 1.646 4.297 1.00 98.79 C -5.748 0.703 4.327 1.00 98.79 O -6.529 2.522 3.302 1.00 98.92 N -5.448 2.621 2.321 1.00 98.92 C -4.713 3.923 2.603 1.00 98.92 C -5.327 4.986 2.662 1.00 98.92 O -5.972 2.546 0.874 1.00 98.92 C -6.733 1.222 0.629 1.00 98.92 C -4.790 2.696 -0.105 1.00 98.92 C -7.287 1.106 -0.797 1.00 98.92 C -3.397 3.862 2.774 1.00 98.86 N -2.573 5.067 2.857 1.00 98.86 C -1.439 4.968 1.859 1.00 98.86 C -0.669 4.019 1.915 1.00 98.86 O -2.120 5.366 4.295 1.00 98.86 C -1.392 6.727 4.332 1.00 98.86 C -1.281 4.237 4.914 1.00 98.86 C -1.071 7.188 5.754 1.00 98.86 C -1.329 5.918 0.936 1.00 98.85 N -0.377 5.788 -0.163 1.00 98.85 C 0.594 6.963 -0.292 1.00 98.85 C 0.271 8.118 0.000 1.00 98.85 O -1.116 5.455 -1.460 1.00 98.85 C -1.924 6.594 -2.006 1.00 98.85 C -3.274 6.778 -1.876 1.00 98.85 C -1.443 7.603 -2.803 1.00 98.85 N -2.486 8.352 -3.188 1.00 98.85 C -3.620 7.903 -2.630 1.00 98.85 N 1.810 6.664 -0.746 1.00 98.66 N 2.784 7.668 -1.153 1.00 98.66 C 2.306 8.417 -2.409 1.00 98.66 C 1.486 7.913 -3.176 1.00 98.66 O 4.137 6.981 -1.365 1.00 98.66 C 2.823 9.630 -2.638 1.00 98.52 N 2.470 10.446 -3.819 1.00 98.52 C 3.534 10.450 -4.916 1.00 98.52 C 3.282 10.985 -5.991 1.00 98.52 O 2.098 11.865 -3.377 1.00 98.52 C 0.796 11.877 -2.558 1.00 98.52 C 0.399 13.292 -2.129 1.00 98.52 C 1.446 13.937 -1.315 1.00 98.52 N 1.463 15.203 -0.938 1.00 98.52 C 0.468 16.005 -1.201 1.00 98.52 N1+ 2.482 15.693 -0.289 1.00 98.52 N 4.703 9.865 -4.674 1.00 97.11 N 5.677 9.602 -5.736 1.00 97.11 C 5.177 8.487 -6.654 1.00 97.11 C 4.507 7.572 -6.188 1.00 97.11 O 7.039 9.264 -5.128 1.00 97.11 C 7.755 10.457 -4.582 1.00 97.11 C 7.640 10.954 -3.332 1.00 97.11 C 8.665 11.358 -5.283 1.00 97.11 C 9.077 12.379 -4.375 1.00 97.11 C 9.174 11.418 -6.598 1.00 97.11 C 8.434 12.074 -3.195 1.00 97.11 N 9.953 13.407 -4.747 1.00 97.11 C 10.051 12.449 -6.984 1.00 97.11 C 10.441 13.440 -6.064 1.00 97.11 C 5.524 8.550 -7.944 1.00 97.53 N 5.155 7.536 -8.943 1.00 97.53 C 3.631 7.374 -9.117 1.00 97.53 C 3.122 6.258 -9.199 1.00 97.53 O 5.909 6.225 -8.637 1.00 97.53 C 7.398 6.464 -8.493 1.00 97.53 C 8.022 6.056 -7.414 1.00 97.53 N 8.020 7.107 -9.315 1.00 97.53 O 2.893 8.497 -9.168 1.00 97.80 N 1.415 8.527 -9.145 1.00 97.80 C 0.733 7.613 -10.152 1.00 97.80 C -0.237 6.978 -9.783 1.00 97.80 O 0.868 9.942 -9.359 1.00 97.80 C 1.099 10.838 -8.138 1.00 97.80 C 0.180 12.060 -8.141 1.00 97.80 C -1.234 11.652 -8.064 1.00 97.80 N -2.296 12.388 -8.305 1.00 97.80 C -2.218 13.677 -8.513 1.00 97.80 N1+ -3.453 11.800 -8.359 1.00 97.80 N 1.229 7.516 -11.385 1.00 98.35 N 0.630 6.634 -12.405 1.00 98.35 C 0.579 5.180 -11.916 1.00 98.35 C -0.442 4.514 -12.049 1.00 98.35 O 1.408 6.753 -13.731 1.00 98.35 C 0.908 5.770 -14.791 1.00 98.35 C 1.284 8.172 -14.305 1.00 98.35 C 1.656 4.717 -11.278 1.00 98.66 N 1.778 3.363 -10.729 1.00 98.66 C 0.975 3.247 -9.425 1.00 98.66 C 0.238 2.283 -9.241 1.00 98.66 O 3.277 3.032 -10.537 1.00 98.66 C 4.056 3.090 -11.877 1.00 98.66 C 3.485 1.634 -9.934 1.00 98.66 C 5.545 3.392 -11.691 1.00 98.66 C 1.071 4.238 -8.531 1.00 98.72 N 0.315 4.257 -7.267 1.00 98.72 C -1.194 4.224 -7.512 1.00 98.72 C -1.881 3.408 -6.907 1.00 98.72 O 0.687 5.493 -6.424 1.00 98.72 C 2.130 5.440 -5.883 1.00 98.72 C -0.297 5.711 -5.264 1.00 98.72 C 2.386 4.408 -4.779 1.00 98.72 C -1.707 5.082 -8.392 1.00 98.66 N -3.138 5.207 -8.660 1.00 98.66 C -3.675 3.888 -9.259 1.00 98.66 C -4.755 3.432 -8.878 1.00 98.66 O -3.408 6.444 -9.560 1.00 98.66 C -3.127 7.830 -8.913 1.00 98.66 C -2.864 7.920 -7.693 1.00 98.66 O -3.189 8.877 -9.609 1.00 98.66 O1- -2.889 3.206 -10.106 1.00 98.59 N -3.217 1.872 -10.613 1.00 98.59 C -3.248 0.801 -9.505 1.00 98.59 C -4.187 0.006 -9.447 1.00 98.59 O -2.220 1.509 -11.719 1.00 98.59 C -2.268 0.791 -8.597 1.00 98.80 N -2.218 -0.156 -7.475 1.00 98.80 C -3.358 0.071 -6.471 1.00 98.80 C -4.003 -0.879 -6.033 1.00 98.80 O -0.872 -0.015 -6.753 1.00 98.80 C 0.351 -0.495 -7.551 1.00 98.80 C 1.615 0.072 -6.906 1.00 98.80 C 0.467 -2.017 -7.591 1.00 98.80 C -3.634 1.330 -6.119 1.00 98.83 N -4.750 1.701 -5.236 1.00 98.83 C -6.071 1.252 -5.855 1.00 98.83 C -6.878 0.621 -5.173 1.00 98.83 O -4.754 3.219 -4.963 1.00 98.83 C -6.027 3.683 -4.240 1.00 98.83 C -3.565 3.632 -4.084 1.00 98.83 C -6.271 1.507 -7.154 1.00 98.69 N -7.456 1.050 -7.885 1.00 98.69 C -7.600 -0.476 -7.835 1.00 98.69 C -8.667 -0.955 -7.462 1.00 98.69 O -7.391 1.586 -9.321 1.00 98.69 C -8.617 1.154 -10.126 1.00 98.69 C -8.531 1.623 -11.579 1.00 98.69 C -9.684 0.927 -12.293 1.00 98.69 C -9.691 1.121 -13.753 1.00 98.69 N1+ -6.533 -1.221 -8.133 1.00 98.43 N -6.546 -2.689 -8.088 1.00 98.43 C -6.905 -3.239 -6.703 1.00 98.43 C -7.691 -4.179 -6.590 1.00 98.43 O -6.409 -2.606 -5.634 1.00 98.61 N -6.765 -2.974 -4.264 1.00 98.61 C -8.247 -2.727 -3.959 1.00 98.61 C -8.913 -3.606 -3.412 1.00 98.61 O -5.845 -2.228 -3.287 1.00 98.61 C -8.776 -1.560 -4.336 1.00 98.75 N -10.187 -1.205 -4.132 1.00 98.75 C -11.103 -2.164 -4.894 1.00 98.75 C -12.012 -2.737 -4.298 1.00 98.75 O -10.439 0.264 -4.538 1.00 98.75 C -9.703 1.207 -3.563 1.00 98.75 C -11.945 0.596 -4.554 1.00 98.75 C -9.637 2.660 -4.043 1.00 98.75 C -10.845 -2.381 -6.186 1.00 98.37 N -11.653 -3.266 -7.034 1.00 98.37 C -11.639 -4.702 -6.504 1.00 98.37 C -12.686 -5.356 -6.428 1.00 98.37 O -11.138 -3.221 -8.484 1.00 98.37 C -11.490 -1.886 -9.163 1.00 98.37 C -10.972 -1.756 -10.605 1.00 98.37 C -11.545 -0.930 -11.357 1.00 98.37 O -9.957 -2.387 -10.967 1.00 98.37 O1- -10.476 -5.186 -6.050 1.00 97.19 N -10.389 -6.519 -5.461 1.00 97.19 C -11.155 -6.624 -4.147 1.00 97.19 C -11.886 -7.596 -3.971 1.00 97.19 O -8.926 -6.937 -5.297 1.00 97.19 C -8.826 -8.381 -4.792 1.00 97.19 C -9.383 -9.384 -5.793 1.00 97.19 C -9.087 -10.755 -5.359 1.00 97.19 N -9.848 -11.810 -5.557 1.00 97.19 C -10.998 -11.728 -6.169 1.00 97.19 N1+ -9.460 -12.976 -5.122 1.00 97.19 N -11.022 -5.656 -3.244 1.00 98.10 N -11.760 -5.649 -1.974 1.00 98.10 C -13.273 -5.570 -2.192 1.00 98.10 C -14.016 -6.325 -1.567 1.00 98.10 O -11.289 -4.478 -1.111 1.00 98.10 C -9.906 -4.750 -0.523 1.00 98.10 C -9.368 -3.533 0.694 1.00 98.10 S -9.242 -2.047 -0.322 1.00 98.10 C -13.726 -4.742 -3.137 1.00 98.04 N -15.130 -4.668 -3.527 1.00 98.04 C -15.643 -6.021 -4.055 1.00 98.04 C -16.725 -6.464 -3.675 1.00 98.04 O -15.284 -3.554 -4.569 1.00 98.04 C -14.837 -6.740 -4.852 1.00 96.69 N -15.181 -8.094 -5.328 1.00 96.69 C -15.313 -9.139 -4.209 1.00 96.69 C -15.909 -10.192 -4.420 1.00 96.69 O -14.176 -8.575 -6.388 1.00 96.69 C -12.983 -9.111 -5.833 1.00 96.69 O -14.763 -8.850 -3.026 1.00 96.60 N -14.834 -9.681 -1.822 1.00 96.60 C -15.860 -9.150 -0.804 1.00 96.60 C -15.910 -9.630 0.325 1.00 96.60 O -13.424 -9.808 -1.219 1.00 96.60 C -12.395 -10.513 -2.121 1.00 96.60 C -10.998 -10.396 -1.513 1.00 96.60 C -12.710 -12.000 -2.301 1.00 96.60 C -16.682 -8.170 -1.190 1.00 97.48 N -17.801 -7.671 -0.392 1.00 97.48 C -17.502 -6.450 0.475 1.00 97.48 C -18.420 -5.975 1.133 1.00 97.48 O -16.277 -5.908 0.481 1.00 98.24 N -15.977 -4.684 1.248 1.00 98.24 C -16.777 -3.511 0.684 1.00 98.24 C -16.666 -3.180 -0.497 1.00 98.24 O -14.477 -4.338 1.258 1.00 98.24 C -14.177 -3.137 2.167 1.00 98.24 C -13.631 -5.511 1.766 1.00 98.24 C -17.569 -2.862 1.535 1.00 98.04 N -18.358 -1.694 1.144 1.00 98.04 C -17.461 -0.483 0.852 1.00 98.04 C -16.520 -0.198 1.592 1.00 98.04 O -19.373 -1.327 2.236 1.00 98.04 C -20.389 -2.442 2.540 1.00 98.04 C -21.466 -2.002 3.548 1.00 98.04 C -22.443 -2.764 3.722 1.00 98.04 O -21.335 -0.892 4.122 1.00 98.04 O1- -17.795 0.297 -0.178 1.00 97.72 N -17.026 1.489 -0.573 1.00 97.72 C -16.852 2.487 0.587 1.00 97.72 C -15.755 2.982 0.835 1.00 97.72 O -17.744 2.141 -1.763 1.00 97.72 C -16.962 3.315 -2.372 1.00 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References

[16, Phos]	Lanz MC, Yugandhar K, Gupta S, Sanford EJ, Faça VM, Vega S, Joiner AMN, Fromme JC, Yu H, Smolka MB (2021). In-depth and 3-dimensional exploration of the budding yeast phosphoproteome. EMBO Reports, e51121. (Publication) (All modifications)
[17, K-acetyl]	Henriksen, P., Wagner, S. A., Weinert, B. T., et al. (2012). Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae. Molecular & Cellular Proteomics, 11(11), 1510-1522. (Publication) (All modifications)