Homepage of Brona Brejova
I am an Assistant Professor (odborny asistent) at the Department of Computer Science, Faculty of Mathematics, Physics and Informatics, Comenius University in Bratislava, Slovakia.
I am a member of computational biology research group.
My name with diacritics: Broňa Brejová (Bro\v{n}a Brejov\'{a} in TeX)
Current teaching (Fall 2009)
2-AIN-501 Metódy v bioinformatike (Methods in bioinformatics) with Tomas Vinar2-AIN-503 Seminár z bioinformatiky (Bioinformatics seminar)
Previous term (Summer 2009):
2-INF-147 Vyhľadávanie v texte (String matching algorithms)
Research
Research interests: gene finding, bioinformatics, algorithms
Publications: see the list
Bioinformatics software:
- ExonHunter - software for gene finding by combination of multiple sources of evidence. [download]
- Mikroskop - software for displaying biological sequence annotation in gtf format. [download]
- TreeArrange - software for reordering and displaying expression array data. [download]
Funding: FP7 International Reintegration Grant
Academic experience
Postdoc, Adam Siepel's group at Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY, USA (August 2006 - December 2008).
Research Assistant Professor, David R. Cheriton School of Computer Science, University of Waterloo, Ontario, Canada (Bioinformatics research group) (September 2005 - July 2006)
Ph.D. in Computer Science, November 2005
David R. Cheriton School of Computer Science, University of Waterloo, Ontario, Canada (Bioinformatics research group)
Thesis: Evidence Combination in Hidden Markov Models for Gene Prediction [details]
Advisors: Ming Li, Daniel G. Brown
Diploma degree (Magister) in Computer Science, 1999
Faculty of Mathematics and Physics, Comenius University in Bratislava, Slovakia,
Thesis: Two Open Problems in Communication Complexity [details]
Advisor: doc. RNDr. Pavol Duris, CSc.
Teaching experience
Fall 2005: Instructor of CS 134 (Principles of Computer Science) at the University of Waterloo
Teaching assistant at University of Waterloo: CS212: F99; CS341 (Algorithms): W00, S00, S01, W02, F02, W03, F03; CS466/666 (Algorithm Design and Analysis): F00, F01; CS360 (Introduction to the Theory of Computing): W01, S02, S03
Teaching assistant at Comenius University: Design of Efficient of Algorithms: F98, Introduction to Distributed Algorithms: F98, Introduction to the Theory of Programming: S99
