1-DAV-202 Data Management 2023/24
Previously 2-INF-185 Data Source Integration
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- 10:01, 11 April 2024 Brona talk contribs uploaded File:Lflask.png
- 10:01, 11 April 2024 Brona talk contribs created page File:Lflask.png
- 08:33, 14 March 2024 Brona talk contribs created page Python (Created page with "This page contains a brief Python tutorial for students who are not very familiar with the language. We will process files <tt>series.csv</tt> and <tt>episodes.csv</tt> introd...")
- 16:46, 7 March 2024 Brona talk contribs moved page HWpython to HWsql
- 16:44, 7 March 2024 Brona talk contribs moved page Lpython to Lsql
- 21:41, 25 January 2024 Brona talk contribs created page Screen (Created page with "Screen is a command that allows you to have a program running on the server even if you close the ssh connection (deliberately / by mistake / due to network problems). It is p...")
- 18:04, 15 May 2023 Brona talk contribs created page Data management 2022/23 (Created page with "Website for 2022/23 {| |- | 2023-02-13 || (BB/TV) || ALL || Introduction to the course || Contact, Introduction, Rules |- | || || || Introduction to Perl || Lpe...")
- 13:47, 19 February 2023 Brona talk contribs created page OPTbash (Created page with "===Task A (yeast genome)=== '''The input file:''' * <tt>/tasks/optional/bash/saccharomyces_cerevisiae.gff</tt> contains annotation of the yeast genome ** Downloaded from htt...")
- 17:50, 12 February 2023 Brona talk contribs deleted page Connecting from Windows (content was: "#REDIRECT Connecting to server", and the only contributor was "Brona" (talk))
- 17:48, 12 February 2023 Brona talk contribs moved page Connecting from Windows to Connecting to server
- 23:41, 11 February 2023 Brona talk contribs created page Command-line basics (Created page with "==Files and folders== * Images, texts, data, etc. are stored in files * Files are grouped in folders (directories) for better organization * A folder can also contain other fo...")
- 11:17, 11 February 2023 Brona talk contribs created page Editors (Created page with "* During the course, you will have to edit scripts, protocols and other files * Our server has several editors installed * If you can use graphical interface, we recommend <tt...")
- 22:11, 10 February 2023 Brona talk contribs moved page Projekt to Project
- 13:07, 10 February 2023 Brona talk contribs deleted page Manažment dát 2021/22 (content was: "#REDIRECT Data management 2021/22", and the only contributor was "Brona" (talk))
- 13:07, 10 February 2023 Brona talk contribs moved page Manažment dát 2021/22 to Data management 2021/22
- 12:34, 10 February 2023 Brona talk contribs deleted page Integrácia dátových zdrojov 2020/21 (content was: "#REDIRECT Data management 2020/21", and the only contributor was "Brona" (talk))
- 12:32, 10 February 2023 Brona talk contribs deleted page Integrácia dátových zdrojov 2021/22 (content was: "#REDIRECT Manažmen dát 2021/22", and the only contributor was "Brona" (talk))
- 12:31, 10 February 2023 Brona talk contribs deleted page Manažmen dát 2021/22 (content was: "#REDIRECT Manažment dát 2021/22", and the only contributor was "Brona" (talk))
- 12:31, 10 February 2023 Brona talk contribs moved page Manažmen dát 2021/22 to Manažment dát 2021/22
- 12:31, 10 February 2023 Brona talk contribs moved page Integrácia dátových zdrojov 2021/22 to Manažmen dát 2021/22
- 12:31, 10 February 2023 Brona talk contribs created page Integrácia dátových zdrojov 2021/22 (Created page with "{| |- | 2022-02-14 || (BB/TV) || ALL || Introduction to the course || [https://goo.gl/forms/aKdhAAUZIGD80PrQ2 Survey], Contact, Introduction, Rules, Connecting...")
- 12:15, 14 February 2022 Brona talk contribs restored page Materiály (1 revision)
- 18:21, 13 February 2022 Brona talk contribs deleted page Materiály (content was: "#REDIRECT Materials", and the only contributor was "Brona" (talk))
- 18:21, 13 February 2022 Brona talk contribs deleted page Pravidlá (content was: "#REDIRECT Rules", and the only contributor was "Brona" (talk))
- 18:20, 13 February 2022 Brona talk contribs restored page Rules (28 revisions)
- 18:20, 13 February 2022 Brona talk contribs deleted page Rules (content was: "==Grading== * Homeworks: 45% * Project proposal: 5% * Project and oral exam: 50% Grades: * A: 90 and more, B: 80...89, C: 70...79, D: 60...69, E: 50...59, FX: less than 50% You can get Fx if your oral exam is not satisfactory, even if you have sufficient points from other actitivities. ==Course format== * Every Monday two-hour class, we start with a short lecture. Then you start solving assigned tasks, which you complete as a homework assignment. * Online office hours on...")
- 18:20, 13 February 2022 Brona talk contribs deleted page Úvod (content was: "#REDIRECT Introduction", and the only contributor was "Brona" (talk))
- 18:19, 13 February 2022 Brona talk contribs deleted page Kontakt (content was: "#REDIRECT Contact", and the only contributor was "Brona" (talk))
- 18:19, 13 February 2022 Brona talk contribs deleted page Archív (content was: "#REDIRECT Archive", and the only contributor was "Brona" (talk))
- 18:19, 13 February 2022 Brona talk contribs moved page Archív to Archive
- 18:17, 13 February 2022 Brona talk contribs moved page Materiály to Materials
- 12:28, 13 February 2022 Brona talk contribs moved page Pravidlá to Rules
- 12:28, 13 February 2022 Brona talk contribs moved page Kontakt to Contact
- 11:26, 13 February 2022 Brona talk contribs moved page Integrácia dátových zdrojov 2020/21 to Data management 2020/21
- 11:15, 13 February 2022 Brona talk contribs created page Integrácia dátových zdrojov 2020/21 (Created page with "Here is a preliminary plan of lectures for this year (the topics and their order may change): {| |- | 2021-02-18 || (BB/TV) Introduction to Perl (basics, input processing) [...")
- 11:38, 23 March 2021 User account Balaz talk contribs was created by Brona talk contribs
- 21:32, 17 February 2021 Brona talk contribs restored page HWperl (1 revision)
- 21:31, 17 February 2021 Brona talk contribs deleted page HWperl
- 17:06, 25 May 2020 Brona talk contribs created page Integrácia dátových zdrojov 2019/20 (Created page with "Website for 2019/20 * Kontakt * Úvod * Pravidlá * Projekt {| |- | 2019-02-20 || (TV) Introduction to Perl (basics, input processing) Lecture, H...")
- 21:16, 29 April 2020 Brona talk contribs created page HWcloud (Created page with "<!-- NOTEX --> See also the lecture For both tasks, submit your source code and the result, when run on whole dataset (<tt>s3://idzbucket2</tt>). The code is expec...")
- 21:16, 29 April 2020 Brona talk contribs created page Lcloud (Created page with "Today we will work with [https://aws.amazon.com/ Amazon Web Services] (AWS), which is a cloud computing platform. It allows highly parallel computation on large datasets. We w...")
- 10:28, 23 April 2020 Brona talk contribs created page HWr2 (Created page with "==HWr2== <!-- NOTEX --> See also the current and the the previous lecture. * Do either tasks A,B,C (beginners) or B,C,D (more advanced). You can also do all f...")
- 10:27, 23 April 2020 Brona talk contribs created page Lr2 (Created page with "<!-- NOTEX --> HWr2 <!-- /NOTEX --> The topic of this lecture are statistical tests in R. * Beginners in statistics: listen to lecture, then do tasks A, B, C * If you kno...")
- 16:01, 15 April 2020 Brona talk contribs uploaded a new version of File:HW08-clusters.png
- 12:26, 15 April 2020 Brona talk contribs uploaded a new version of File:HW08-heatmap.png
- 21:52, 14 April 2020 Brona talk contribs created page Lr1 (Created page with "<!-- NOTEX --> HWr1 <!-- /NOTEX --> Program for this lecture: basics of R (applied to biology examples) * very short intro as a lecture * exercises have the form of a tut...")
- 21:33, 14 April 2020 Brona talk contribs created page HWr1 (Created page with "<!-- NOTEX --> See also the lecture <!-- /NOTEX --> In this homework, try to read the text, execute given commands, potentially trying some small modifications. Then...")
- 20:29, 31 March 2020 Brona talk contribs created page HWbioinf3 (Created page with "==HWbioinf3== <!-- NOTEX --> See also the lecture Submit the protocol and the required files to <tt>/submit/bioinf3</tt> <!-- /NOTEX --> ===Input files=== Copy...")
- 20:29, 31 March 2020 Brona talk contribs created page Lbioinf3 (Created page with "<!-- NOTEX --> HWbioinf3 <!-- /NOTEX --> ==Polymorphisms== * Individuals within species differ slightly in their genomes * Polymorphisms are genome variants which are rel...")
- 20:24, 31 March 2020 Brona talk contribs created page HWjavascript (Created page with "<!-- NOTEX --> See the lecture <!-- /NOTEX --> '''General goal:''' Extend the user pages from the previous lecture with simple visualizations. <!-- NOTEX -->...")
- 20:24, 31 March 2020 Brona talk contribs created page Ljavascript (Created page with "=Ljavascript= <!-- NOTEX --> HWjavascript <!-- /NOTEX --> In this lecture we will extend the website from the previous lecture with interactive visualizations written in...")
- 12:14, 25 March 2020 Brona talk contribs created page HWbioinf2 (Created page with "<!-- NOTEX --> See also the lecture Submit the protocol and the required files to <tt>/submit/bioinf2</tt> <!-- /NOTEX --> ===Input files=== Copy files from /ta...")
- 12:14, 25 March 2020 Brona talk contribs created page Lbioinf2 (Created page with "<!-- NOTEX --> HWbioinf2 <!-- /NOTEX --> ==Eukaryotic gene structure== * Recall the Central dogma of molecular biology: the flow of genetic information from DNA to RNA to...")
- 12:07, 25 March 2020 Brona talk contribs created page HWflask (Created page with "<!-- NOTEX --> See the lecture <!-- /NOTEX --> '''General goal:''' Build a simple website, which lists all crawled users and for each users has a page with simple...")
- 12:06, 25 March 2020 Brona talk contribs created page Lflask (Created page with "=Lflask= <!-- NOTEX --> HWflask <!-- /NOTEX --> In this lecture, we will use Python to process user comments obtained in the previous lecture. * We will display informat...")
- 14:24, 18 March 2020 Brona talk contribs created page HWbioinf1 (Created page with "<!-- NOTEX --> See also the lecture Submit the protocol and the required files to <tt>/submit/bioinf1</tt> <!-- /NOTEX --> ===Task A: examine input files=== Cop...")
- 14:23, 18 March 2020 Brona talk contribs created page Lbioinf1 (Created page with "<!-- NOTEX --> HWbioinf1 <!-- /NOTEX --> The next three lectures at targeted at the students in the Bioinformatics program and the goal is to get experience with several...")
- 19:20, 12 March 2020 Brona talk contribs created page HWweb (Created page with "<!-- NOTEX --> See the lecture <!-- /NOTEX --> <!-- NOTEX --> Submit by copying requested files to <tt>/submit/web/username/</tt> <!-- /NOTEX --> '''General goal:''...")
- 19:19, 12 March 2020 Brona talk contribs created page Lweb (Created page with "=Lweb= <!-- NOTEX --> HWweb <!-- /NOTEX --> In this lecture, we will extract information from a website using Python and existing Python libraries. We will store the resu...")
- 14:22, 9 March 2020 Brona talk contribs created page HWpython (Created page with "==HWpython== <!-- NOTEX --> See also the lecture <!-- /NOTEX --> ===Introduction=== Choose one of the options: * Tasks A, B1, B2, C (recommended for beginners)...")
- 14:21, 9 March 2020 Brona talk contribs created page Lpython (Created page with "<!-- NOTEX --> HWpython <!-- /NOTEX --> This lecture introduces the basics of the Python programming language. We will also cover basics of working with databases using t...")
- 08:31, 5 March 2020 Brona talk contribs created page HWmake (Created page with "<!-- NOTEX --> See also the lecture <!-- /NOTEX --> ===Motivation: Building Phylogenetic Trees=== The task for today will be to build a phylogenetic tree of 9 mamm...")
- 08:30, 5 March 2020 Brona talk contribs created page Lmake (Created page with "==Job Scheduling== * Some computing jobs take a lot of time: hours, days, weeks,... * We do not want to keep a command-line window open the whole time; therefore we run such...")
- 13:29, 26 February 2020 Brona talk contribs created page HWbash (Created page with "<!-- NOTEX --> Lecture on Perl, Lecture on command-line tools <!-- /NOTEX --> * In this set of tasks, use command-line tools or one-liners in Perl, awk or...")
- 13:27, 26 February 2020 Brona talk contribs created page Lbash (Created page with "=Lbash= <!-- NOTEX --> #HWbash <!-- /NOTEX --> This lecture introduces command-line tools and Perl one-liners. * We will do simple transformations of text files using co...")
- 22:43, 19 February 2020 Brona talk contribs moved page Úvod to Introduction
- 21:39, 19 February 2020 Brona talk contribs created page HWperl (Created page with "==HWperl== <!-- NOTEX --> See the lecture <!-- /NOTEX --> ===Files and setup=== We recommend creating a directory (folder) for this set of tasks: <syntaxhighlight l...")
- 21:34, 19 February 2020 Brona talk contribs created page Lperl (Created page with "=Lperl= This lecture is a brief introduction to the Perl scripting language. More information can be found below (section #Sources of Perl-related information). We recomme...")
- 21:36, 12 February 2020 Brona talk contribs deleted page L08
- 21:36, 12 February 2020 Brona talk contribs deleted page L09
- 21:36, 12 February 2020 Brona talk contribs deleted page L10
- 21:36, 12 February 2020 Brona talk contribs deleted page L10-2019
- 21:36, 12 February 2020 Brona talk contribs deleted page L11
- 21:36, 12 February 2020 Brona talk contribs deleted page L01
- 21:36, 12 February 2020 Brona talk contribs deleted page L02
- 21:36, 12 February 2020 Brona talk contribs deleted page L03
- 21:36, 12 February 2020 Brona talk contribs deleted page L04
- 21:36, 12 February 2020 Brona talk contribs deleted page L05bin
- 21:36, 12 February 2020 Brona talk contribs deleted page L05inf
- 21:36, 12 February 2020 Brona talk contribs deleted page L06
- 21:36, 12 February 2020 Brona talk contribs deleted page L06bin
- 21:36, 12 February 2020 Brona talk contribs deleted page L06inf
- 21:36, 12 February 2020 Brona talk contribs deleted page L07bin
- 21:36, 12 February 2020 Brona talk contribs deleted page L07inf
- 21:36, 12 February 2020 Brona talk contribs deleted page HW05inf
- 21:36, 12 February 2020 Brona talk contribs deleted page HW06
- 21:36, 12 February 2020 Brona talk contribs deleted page HW06bin
- 21:36, 12 February 2020 Brona talk contribs deleted page HW06inf
- 21:36, 12 February 2020 Brona talk contribs deleted page HW07bin
- 21:36, 12 February 2020 Brona talk contribs deleted page HW07inf
- 21:36, 12 February 2020 Brona talk contribs deleted page HW08
- 21:36, 12 February 2020 Brona talk contribs deleted page HW09
- 21:36, 12 February 2020 Brona talk contribs deleted page HW10
- 21:36, 12 February 2020 Brona talk contribs deleted page HW10-2019
- 21:36, 12 February 2020 Brona talk contribs deleted page HW11
- 21:36, 12 February 2020 Brona talk contribs deleted page HW01
- 21:36, 12 February 2020 Brona talk contribs deleted page HW02
- 21:36, 12 February 2020 Brona talk contribs deleted page HW03
- 21:36, 12 February 2020 Brona talk contribs deleted page HW04
- 21:36, 12 February 2020 Brona talk contribs deleted page HW05bin
- 11:01, 2 August 2019 Brona talk contribs uploaded File:Tree.png
- 14:12, 29 June 2019 Brona talk contribs moved page HW10-2019 to HW10
- 14:12, 29 June 2019 Brona talk contribs moved page L10-2019 to L10
- 14:11, 29 June 2019 Brona talk contribs deleted page HW10 (content was: "L10 * Do either tasks A,B,C (beginners) or B,C,D (more advanced). If you really want, you can do all four for bonus credit. * In your protocol write used R comman..." (and the only contributor was "Brona"))
- 14:11, 29 June 2019 Brona talk contribs deleted page L10 (content was: "HW10 Topic of this lecture are statistical tests in R. * Beginners in statistics: listen to lecture, then do tasks A, B, C * If you know basics of statistical te..." (and the only contributor was "Brona"))
- 12:52, 11 April 2019 Brona talk contribs moved page L09 to L08 without leaving a redirect
- 12:51, 11 April 2019 Brona talk contribs moved page HW09 to HW08 without leaving a redirect
- 12:51, 11 April 2019 Brona talk contribs deleted page HW08
- 12:51, 11 April 2019 Brona talk contribs deleted page L08
- 17:17, 27 March 2019 Brona talk contribs uploaded File:Dogma.png
- 18:43, 21 March 2019 Brona talk contribs moved page HW07 to HW06inf without leaving a redirect
- 18:42, 21 March 2019 Brona talk contribs moved page L07 to L06inf without leaving a redirect
- 09:47, 21 March 2019 Brona talk contribs uploaded File:Dotplot-mt-human-dros.png
- 21:47, 19 March 2019 Brona talk contribs moved page L05i to L05inf without leaving a redirect
- 21:46, 19 March 2019 Brona talk contribs moved page HW05i to HW05inf without leaving a redirect
- 13:50, 14 March 2019 Brona talk contribs moved page HW05 to HW04 without leaving a redirect
- 13:44, 14 March 2019 Brona talk contribs moved page L05 to L04 without leaving a redirect
- 21:15, 6 March 2019 Brona talk contribs moved page HW04 to HW03 without leaving a redirect
- 21:14, 6 March 2019 Brona talk contribs moved page L04 to L03 without leaving a redirect
- 21:00, 27 February 2019 Brona talk contribs moved page HW03 to HW02 without leaving a redirect
- 20:59, 27 February 2019 Brona talk contribs deleted page HW02
- 20:56, 27 February 2019 Brona talk contribs moved page L03 to L02 without leaving a redirect
- 20:55, 27 February 2019 Brona talk contribs deleted page L02
- 13:17, 21 March 2017 Brona talk contribs deleted page HW08
- 13:17, 21 March 2017 Brona talk contribs moved page HW08 to HW05
- 14:22, 28 February 2017 Brona talk contribs uploaded a new version of File:L02 human 31770.png
- 14:22, 28 February 2017 Brona talk contribs uploaded a new version of File:L02 human 15749.png
- 14:21, 28 February 2017 Brona talk contribs uploaded a new version of File:L02 human 13531.png
- 14:21, 28 February 2017 Brona talk contribs uploaded a new version of File:L02 consensus.png
- 14:07, 28 February 2017 Brona talk contribs uploaded File:L02 human 15749.png
- 14:07, 28 February 2017 Brona talk contribs uploaded File:L02 human 13531.png
- 14:07, 28 February 2017 Brona talk contribs uploaded File:L02 human 31770.png
- 14:06, 28 February 2017 Brona talk contribs uploaded File:L02 consensus.png
- 22:07, 20 February 2017 Brona talk contribs moved page L1 to L01 without leaving a redirect
- 22:07, 20 February 2017 Brona talk contribs deleted page HW3 (content was: "#REDIRECT HW03" (and the only contributor was "Brona"))
- 22:06, 20 February 2017 Brona talk contribs deleted page HW2
- 22:06, 20 February 2017 Brona talk contribs deleted page HW1
- 21:56, 20 February 2017 Brona talk contribs deleted page HW07
- 21:56, 20 February 2017 Brona talk contribs deleted page HW08
- 21:56, 20 February 2017 Brona talk contribs deleted page HW09
- 21:56, 20 February 2017 Brona talk contribs deleted page HW10
- 21:56, 20 February 2017 Brona talk contribs deleted page HW11
- 21:56, 20 February 2017 Brona talk contribs deleted page L10
- 21:56, 20 February 2017 Brona talk contribs deleted page L11
- 21:56, 20 February 2017 Brona talk contribs deleted page L2
- 21:56, 20 February 2017 Brona talk contribs deleted page L3
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- 21:56, 20 February 2017 Brona talk contribs deleted page L6
- 21:56, 20 February 2017 Brona talk contribs deleted page L7
- 21:56, 20 February 2017 Brona talk contribs deleted page L8
- 21:56, 20 February 2017 Brona talk contribs deleted page L9
- 21:56, 20 February 2017 Brona talk contribs deleted page HW02
- 21:56, 20 February 2017 Brona talk contribs deleted page HW03
- 21:56, 20 February 2017 Brona talk contribs deleted page HW04
- 21:56, 20 February 2017 Brona talk contribs deleted page HW05
- 21:56, 20 February 2017 Brona talk contribs deleted page HW06
- 21:43, 1 May 2016 User account Lpryszcz talk contribs was created by Brona talk contribs and password was sent by email
- 14:09, 13 April 2016 Brona talk contribs uploaded File:HW08-clusters.png
- 14:05, 13 April 2016 Brona talk contribs deleted page File:HW08-clusters.png
- 14:01, 13 April 2016 Brona talk contribs uploaded File:HW08-clusters.png
- 14:01, 13 April 2016 Brona talk contribs uploaded File:HW08-heatmap.png
- 15:10, 16 March 2016 Brona talk contribs moved page HW3 to HW03
- 15:10, 16 March 2016 Brona talk contribs moved page HW1 to HW01
- 15:10, 16 March 2016 Brona talk contribs moved page HW2 to HW02
- 16:07, 2 March 2016 User account Usama talk contribs was created by Brona talk contribs and password was sent by email
- 15:21, 2 March 2016 Brona talk contribs deleted page Editor:Teacher/common.css
- 15:07, 2 March 2016 User account Teacher talk contribs was created by Brona talk contribs
- 10:16, 1 March 2016 User account Tvinar talk contribs was created by Brona talk contribs
- 14:16, 12 February 2016 Brona talk contribs deleted page File:Logo.png (Deleted old revision 20160212121609!Logo.png)
- 14:16, 12 February 2016 Brona talk contribs uploaded a new version of File:Logo.png
- 13:44, 12 February 2016 Brona talk contribs uploaded File:E-bb.png
- 13:37, 12 February 2016 Brona talk contribs uploaded File:Logo.png
- 13:37, 12 February 2016 Brona talk contribs deleted page File:Logo.png
- 13:31, 12 February 2016 Brona talk contribs deleted page File:Logo.png (Deleted old revision 20160212113029!Logo.png)
- 13:30, 12 February 2016 Brona talk contribs uploaded a new version of File:Logo.png
- 13:28, 12 February 2016 Brona talk contribs uploaded File:Logo.png