2-AIN-505, 2-AIN-251: Seminár z bioinformatiky (1) a (3)
Zima 2015
Rozvrh

Seminár:
Utorok 17:20, M-I
 
Vyučujúci:
Mgr. Tomáš Vinař, PhD M-163,
 
 
doc. Mgr. Broňa Brejová, PhD M-163,
 
 
Oznamy:
Prvé stretnutie sa uskutoční 29.9. o 17:20, kde preberieme organizačné detaily a budeme mať aj prvú prezentáciu.
 
Zoznam prezentácií:
22.9.2015
seminár nebude
29.9.2015
Broňa Brejová

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Nicholas J. Loman, Joshua Quick, Jared T. Simpson.
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A complete bacterial genome assembled de novo using only nanopore sequencingdata.
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Nature methods,
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2015.
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link
prezentácia:
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pozri neskôr
6.10.2015
seminár nebude
13.10.2015
Jaro Budiš

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Mark J. Chaisson, Glenn Tesler.
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Mapping single molecule sequencing reads using basic local alignment withsuccessive refinement (BLASR): application and theory.
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BMC bioinformatics,
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2012.
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link
prezentácia:
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pozri neskôr
20.10.2015
Vlado Boža

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Konstantin Berlin, Sergey Koren, Chen-Shan Chin, James P. Drake, Jane M. Landolin, Adam M. Phillippy.
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Assembling large genomes with single-molecule sequencing and locality-sensitivehashing.
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Nature biotechnology,
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2015.
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link
prezentácia:
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pozri neskôr
27.10.2015
Mária Lucká

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Leena Salmela, Kristoffer Sahlin, Veli Mäkinen, Alexandru I. Tomescu:.
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Gap Filling as Exact Path Length Problem. In
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RECOMB 2015,
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2015.
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link
prezentácia:
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pozri neskôr
3.11.2015
Broňa Brejová

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Matthew W. Hahn, Tijl {De Bie}, Jason E. Stajich, Chi Nguyen, Nello Cristianini.
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Estimating the tempo and mode of gene family evolution from comparative genomicdata.
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Genome research,
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2005.
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link
prezentácia:
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pozri neskôr
10.11.2015
Mio Hozza

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Petr Novak, Pavel Neumann, Jiri Pech, Jaroslav Steinhaisl, Jiri Macas.
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RepeatExplorer: a Galaxy-based web server for genome-wide characterization ofeukaryotic repetitive elements from next-generation sequence reads.
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Bioinformatics,
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2013.
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link
prezentácia:
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pozri neskôr
17.11.2015
sviatok
24.11.2015

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Katja Nowick, Christopher Fields, Tim Gernat, Derek Caetano-Anolles, Nadezda Kholina, Lisa Stubbs.
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Gain, loss and divergence in primate zinc-finger genes: a rich resource forevolution of gene regulatory differences between species.
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PLoS One,
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2011.
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link
prezentácia:
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pozri neskôr
1.12.2015
Albert Herencsár

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Jared T. Simpson, Rebecca E. McIntyre, David J. Adams, Richard Durbin.
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Copy number variant detection in inbred strains from short read sequence data.
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Bioinformatics,
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2010.
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link
prezentácia:
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pozri neskôr
8.12.2015
Askar Gafurov

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Andrew McPherson, Andrew Roth, Cedric Chauve, S. Cenk Sahinalp.
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Joint Inference of Genome Structure and Content in Heterogeneous Tumor Samples. In
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RECOMB 2015,
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2015.
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link
prezentácia:
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pozri neskôr
15.12.2015
Werner Krampl

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Fabio Vandin, Eli Upfal, Benjamin J. Raphael.
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De novo discovery of mutated driver pathways in cancer.
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Genome research,
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2012.
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link
prezentácia:
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pozri neskôr