2-AIN-505, 2-AIN-251: Seminár z bioinformatiky (1) a (3)
Zima 2015
Rozvrh

Seminár:
Utorok 17:20, M-I
 
Vyučujúci:
Mgr. Tomáš Vinař, PhD M-163,
 
 
doc. Mgr. Broňa Brejová, PhD M-163,
 
 
Oznamy:
Prvé stretnutie sa uskutoční 29.9. o 17:20, kde preberieme organizačné detaily a budeme mať aj prvú prezentáciu.
 
Zoznam prezentácií:
22.9.2015
seminár nebude
29.9.2015
Broňa Brejová
Nicholas J. Loman, Joshua Quick, Jared T. Simpson. A complete bacterial genome assembled de novo using only nanopore sequencingdata. Nature methods, 2015. link
prezentácia:
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pozri neskôr
6.10.2015
seminár nebude
13.10.2015
Jaro Budiš
Mark J. Chaisson, Glenn Tesler. Mapping single molecule sequencing reads using basic local alignment withsuccessive refinement (BLASR): application and theory. BMC bioinformatics, 2012. link
prezentácia:
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pozri neskôr
20.10.2015
Vlado Boža
Konstantin Berlin, Sergey Koren, Chen-Shan Chin, James P. Drake, Jane M. Landolin, Adam M. Phillippy. Assembling large genomes with single-molecule sequencing and locality-sensitivehashing. Nature biotechnology, 2015. link
prezentácia:
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pozri neskôr
27.10.2015
Mária Lucká
Leena Salmela, Kristoffer Sahlin, Veli Mäkinen, Alexandru I. Tomescu:. Gap Filling as Exact Path Length Problem. In RECOMB 2015, 2015. link
prezentácia:
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pozri neskôr
3.11.2015
Broňa Brejová
Matthew W. Hahn, Tijl {De Bie}, Jason E. Stajich, Chi Nguyen, Nello Cristianini. Estimating the tempo and mode of gene family evolution from comparative genomicdata. Genome research, 2005. link
prezentácia:
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pozri neskôr
10.11.2015
Mio Hozza
Petr Novak, Pavel Neumann, Jiri Pech, Jaroslav Steinhaisl, Jiri Macas. RepeatExplorer: a Galaxy-based web server for genome-wide characterization ofeukaryotic repetitive elements from next-generation sequence reads. Bioinformatics, 2013. link
prezentácia:
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pozri neskôr
17.11.2015
sviatok
24.11.2015
Katja Nowick, Christopher Fields, Tim Gernat, Derek Caetano-Anolles, Nadezda Kholina, Lisa Stubbs. Gain, loss and divergence in primate zinc-finger genes: a rich resource forevolution of gene regulatory differences between species. PLoS One, 2011. link
prezentácia:
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pozri neskôr
1.12.2015
Albert Herencsár
Jared T. Simpson, Rebecca E. McIntyre, David J. Adams, Richard Durbin. Copy number variant detection in inbred strains from short read sequence data. Bioinformatics, 2010. link
prezentácia:
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pozri neskôr
8.12.2015
Askar Gafurov
Andrew McPherson, Andrew Roth, Cedric Chauve, S. Cenk Sahinalp. Joint Inference of Genome Structure and Content in Heterogeneous Tumor Samples. In RECOMB 2015, 2015. link
prezentácia:
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pozri neskôr
15.12.2015
Werner Krampl
Fabio Vandin, Eli Upfal, Benjamin J. Raphael. De novo discovery of mutated driver pathways in cancer. Genome research, 2012. link
prezentácia:
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pozri neskôr