2-AIN-505, 2-AIN-251: Seminár z bioinformatiky (1) a (3)
Zima 2015
Zoznam článkov
- Leena Salmela, Kristoffer Sahlin, Veli Mäkinen, Alexandru I. Tomescu:.
Gap Filling as Exact Path Length Problem.
In RECOMB 2015,
pp. 281-292, 2015. Springer.
[ Abstract ] [ Download from publisher ] [ BibTeX ]
- Konstantin Berlin, Sergey Koren, Chen-Shan Chin, James P. Drake, Jane M. Landolin, Adam M. Phillippy.
Assembling large genomes with single-molecule sequencing and locality-sensitivehashing.
Nature biotechnology,
33(6):623-630.
2015.
[ Abstract ] [ BibTeX ] [ PubMed ]
- Nicholas J. Loman, Joshua Quick, Jared T. Simpson.
A complete bacterial genome assembled de novo using only nanopore sequencingdata.
Nature methods,
12(8):733-735.
2015.
[ Abstract ] [ BibTeX ] [ PubMed ]
- Andrew McPherson, Andrew Roth, Cedric Chauve, S. Cenk Sahinalp.
Joint Inference of Genome Structure and Content in Heterogeneous Tumor Samples.
In RECOMB 2015,
2015.
[ Abstract ] [ Download from publisher ] [ BibTeX ]
- Petr Novak, Pavel Neumann, Jiri Pech, Jaroslav Steinhaisl, Jiri Macas.
RepeatExplorer: a Galaxy-based web server for genome-wide characterization ofeukaryotic repetitive elements from next-generation sequence reads.
Bioinformatics,
29(6):792-793.
2013.
[ Abstract ] [ BibTeX ] [ PubMed ]
- Fabio Vandin, Eli Upfal, Benjamin J. Raphael.
De novo discovery of mutated driver pathways in cancer.
Genome research,
22(2):375-375.
2012.
[ Abstract ] [ BibTeX ] [ PubMed ]
- Mark J. Chaisson, Glenn Tesler.
Mapping single molecule sequencing reads using basic local alignment withsuccessive refinement (BLASR): application and theory.
BMC bioinformatics,
13:238.
2012.
[ Abstract ] [ BibTeX ] [ PubMed ]
- Katja Nowick, Christopher Fields, Tim Gernat, Derek Caetano-Anolles, Nadezda Kholina, Lisa Stubbs.
Gain, loss and divergence in primate zinc-finger genes: a rich resource forevolution of gene regulatory differences between species.
PLoS One,
6(6):e21553.
2011.
[ Abstract ] [ BibTeX ] [ PubMed ]
- Jared T. Simpson, Rebecca E. McIntyre, David J. Adams, Richard Durbin.
Copy number variant detection in inbred strains from short read sequence data.
Bioinformatics,
26(4):565-567.
2010.
[ Abstract ] [ BibTeX ] [ PubMed ]
- Matthew W. Hahn, Tijl {De Bie}, Jason E. Stajich, Chi Nguyen, Nello Cristianini.
Estimating the tempo and mode of gene family evolution from comparative genomicdata.
Genome research,
15(8):1153-1160.
2005.
[ Abstract ] [ BibTeX ] [ PubMed ]
