2-AIN-505, 2-AIN-251: Seminár z bioinformatiky (1) a (3)
Zima 2016
Rozvrh

Seminár:
Utorok 17:20, M-VIII
 
Vyučujúci:
Mgr. Tomáš Vinař, PhD M-163,
 
 
doc. Mgr. Broňa Brejová, PhD M-163,
 
 
Oznamy:
Prvé stretnutie sa uskutoční 27.9. o 17:20, kde preberieme organizačné detaily a budeme mať aj prvú prezentáciu.
 
Zoznam prezentácií:
20.9.2016
seminár nebude
27.9.2016
Tomáš Vinař


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Matei David, L. J. Dursi, Delia Yao, Paul C. Boutros, Jared T. Simpson.
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Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data.
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Bioinformatics,
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2016.
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link

4.10.2016
Vlado Boža


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Matthew Loose, Sunir Malla, Michael Stout.
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Real-time selective sequencing using nanopore technology.
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Nature methods,
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2016.
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link

11.10.2016
Dávid Simeunovič


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Yesesri Cherukuri, Sarath Chandra Janga.
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Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches.
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BMC genomics,
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2016.
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link

18.10.2016
Jaro Budiš


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Jared T Simpson, Rachael Workman, Philip C Zuzarte, Matei David, Lewis Jonathan Dursi, Winston Timp.
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Detecting DNA Methylation using the Oxford Nanopore Technologies MinION sequencer. Technical Report
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047142,
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bioRxiv,
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2016.
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link

25.10.2016
Dominika Čierna


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Jaina Mistry, Robert D. Finn, Sean R. Eddy, Alex Bateman, Marco Punta.
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Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions.
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Nucleic acids research,
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2013.
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1.11.2016
sviatok
8.11.2016
Magdaléna Kacejová


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Olof Emanuelsson, Soren Brunak, Gunnar von Heijne, Henrik Nielsen.
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Locating proteins in the cell using TargetP, SignalP and related tools.
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Nat Protoc,
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2007.
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15.11.2016
Matej Krajčovič


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Nathan J. Kuwada, Beth Traxler, Paul A. Wiggins.
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Genome-scale quantitative characterization of bacterial protein localization dynamics throughout the cell cycle.
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Molecular microbiology,
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2015.
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22.11.2016
Broňa Brejová


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Alexandros A. Pittis, Toni Gabaldon.
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Late acquisition of mitochondria by a host with chimaeric prokaryotic ancestry.
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Nature,
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2016.
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29.11.2016
Tomáš Vinař


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Martin WF, Roettger M, Ku C, Garg SG, Nelson-Sathi S, Landan G..
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Late mitochondrial origin is pure artefact. Technical Report
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055368,
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bioRxiv,
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2016.
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Alexandros A. Pittis, Toni Gabaldon.
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On phylogenetic branch lengths distribution and the late acquistion of mitochondria. Technical Report
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064873,
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biorxiv,
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2016.
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6.12.2016
13.12.2016