2-AIN-505, 2-AIN-251: Seminár z bioinformatiky (1) a (3)
Zima 2016
Zoznam článkov

• Alexandros A. Pittis, Toni Gabaldon. On phylogenetic branch lengths distribution and the late acquistion of mitochondria. Technical Report 064873, biorxiv, 2016.
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• Martin WF, Roettger M, Ku C, Garg SG, Nelson-Sathi S, Landan G.. Late mitochondrial origin is pure artefact. Technical Report 055368, bioRxiv, 2016.
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• Alexandros A. Pittis, Toni Gabaldon. Late acquisition of mitochondria by a host with chimaeric prokaryotic ancestry. Nature, 531(7592):101-104. 2016.
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• Yesesri Cherukuri, Sarath Chandra Janga. Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches. BMC genomics, 17 Suppl 7:507. 2016.
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• Jared T Simpson, Rachael Workman, Philip C Zuzarte, Matei David, Lewis Jonathan Dursi, Winston Timp. Detecting DNA Methylation using the Oxford Nanopore Technologies MinION sequencer. Technical Report 047142, bioRxiv, 2016.
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• Matthew Loose, Sunir Malla, Michael Stout. Real-time selective sequencing using nanopore technology. Nature methods, 13(9):751-754. 2016.
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• Matei David, L. J. Dursi, Delia Yao, Paul C. Boutros, Jared T. Simpson. Nanocall: An Open Source Basecaller for Oxford Nanopore Sequencing Data. Bioinformatics, 2016.
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• Nathan J. Kuwada, Beth Traxler, Paul A. Wiggins. Genome-scale quantitative characterization of bacterial protein localization dynamics throughout the cell cycle. Molecular microbiology, 95(1):64-79. 2015.
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• Jaina Mistry, Robert D. Finn, Sean R. Eddy, Alex Bateman, Marco Punta. Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions. Nucleic acids research, 41(12):e121. 2013.
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• Olof Emanuelsson, Soren Brunak, Gunnar von Heijne, Henrik Nielsen. Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc, 2(4):953-961. 2007.
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