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doc. Mgr. Bronislava Brejová, PhD. (Full Professor position)
Department of Computer Science,
Faculty of Mathematics, Physics and
Informatics, Comenius University in
Bratislava, Slovakia
Member of computational biology research group (news on Facebook)
Mailing address: B. Brejová, KI FMFI UK, Mlynská Dolina, 842 48 Bratislava, Slovakia
Office: M163, phone: +421-2-60295217, e-mail: brejova at dcs.fmph.uniba.sk
Teaching
Winter:
2-AIN-501/1-BIN-301 Metódy v bioinformatike (Methods in bioinformatics) with Tomáš Vinař, Askar Gafurov
1-INF-127 Programovanie (1) v C/C++ (Programming in C/C++) with Dušan Bernát
1-DAV-921, 1-BIN-921
Bakalársky seminár (1) (Bachelor thesis seminar (1)) with Askar Gafurov
2-AIN-505 Seminár z bioinformatiky (1) (Bioinformatics seminar) with Tomáš Vinař
Summer:
1-INF-920 Bakalársky seminár (2) (Bachelor thesis seminar (2)) with Dana Pardubská and Tomáš Plachetka
2-INF-185 Integrácia dátových zdrojov (Integration of data sources) with Tomáš Vinař and Vladimír Boža
1-DAV-105 Vizualizácia dát (Data visualization) with Martina Bátorová
2-AIN-506 Seminár z bioinformatiky (2) (Bioinformatics seminar) with Tomáš Vinař
Research
Research interests: bioinformatics, algorithms, sequence analysis, comparative genomics
Publications: see Google scholar, ORCiD, publications of our group
Bioinformatics software: see the list from our group
Funding (PI): VEGA grant 1/0463/20 (2020-2023)
Previous funding: FP7 International Reintegration Grant (2009-2012), Slovakia-China bilateral travel grant (2010-2011), VEGA grant 1/1085/12 (2012-2015), VEGA grant 1/0684/16 (2016-2019)
Team member in other current grants: 2020-2023 H2020 872539 PANGAIA, 2021-2024 H2020 956229 ALPACA, 2019-2023 APVV-18-0239 (PI Jozef Nosek), 2018-2021: VEGA 1/0458/18 (PI Tomáš Vinař),
Student supervision
Current: Adrián Goga (doctoral), Veronika Tordová, Juraj Vašut, Klára Sládečková (master), Barbora Hamidová (bachelor)
Graduated:
Doctoral: Askar Gafurov (2022), Jaroslav Budiš (2018), Michal Nánási (2015), Martina Višňovská (2014)
Master:
Eva Herencsárová (2023),
Dávid Simeunovič (2022), Dominika Szabová (2022), Dominika Mihálová (2021), Samuel Molčan (2021), Radoslav Chládek (2019),
Peter Koza (2019), Askar Gafurov (2018), Matej Krajčovič (2018), Werner Krampl (2018), Michal Sabo (2015),
Soňa Gibaštíková (2014), Albert Herencsár (2014), Andrej Ridzik (2014), Lukáš Bača (2014), Ladislav Rampášek (2012),
Jaroslav Budiš (2011), Marcel Kucharík (2011), Juraj Mešťánek (2010), Michal Nánási (2010) Jakub Kováč (2009),
Rastislav Šrámek (2007, co-supervision with Tomáš Vinař),
Bachelor:
Pavlína Ružičková (2022),
Veronika Tordová (2021), Angelika Fedáková (2020), Dominika Békesová (2019), Jaroslava Kokavcová (2019), Kristína Váryová (2019),
Dominik Bujna (2018), Radoslav Chládek (2017), Mário Lipovský (2017), Peter Koza (2016), Dávid Simeunovič (2016),
Petra Kubincová (2014), Michal Petrucha (2012), Andrej Ridzik (2011), Peter Herman (2010), Peter Kováč (2010),
See also the list of people in the computational biology research group.
Other activities
- Editor of Journal of Bioinformatics and Computational Biology
- Guarantor for Bioinformatics study program (bachelor level)
- Member of VEGA grant agency committee for biology
- Local student research conference
Academic experience
- Faculty member, Department of Computer Science,
Faculty of Mathematics, Physics and
Informatics, Comenius University in
Bratislava, Slovakia (January 2009-present)
Assistant professor (odborný asistent) 01/2009 - 12/2009
Independent researcher (vedecký pracovník, VKS IIa) 01/2010 - 05/2014
Associate professor (docent) 05/2014 - present - Postdoc, Adam Siepel's group at Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY, USA (August 2006 - December 2008).
- Research Assistant Professor, David R. Cheriton School of Computer Science, University of Waterloo, Ontario, Canada (Bioinformatics research group) (September 2005 - July 2006)
- Ph.D. in Computer Science, November 2005
David R. Cheriton School of Computer Science, University of Waterloo, Ontario, Canada (Bioinformatics research group)
Thesis: Evidence Combination in Hidden Markov Models for Gene Prediction [details]
Advisors: Ming Li, Daniel G. Brown - Diploma degree (Magister) in Computer Science, 1999
Faculty of Mathematics and Physics, Comenius University in Bratislava, Slovakia,
Thesis: Two Open Problems in Communication Complexity [details]
Advisor: prof. RNDr. Pavol Ďuriš, CSc.