GAML: Genome Assembly by Maximum Likelihood

GAML is a prototype genome assembly tool based on maximizing likelihood of the assembly in a model encompaasing error rate, insert length and other features of indvidual sequencing technologies. It can combine datasets produced by different technologies (currently Illumina, 454 and Pacific Biosciences).

GitHub repository

• GAML github repository

Datasets

• Staphylococus aureus assembly: input data, GAML output
• Ecoli assembly: Illumina data, Pacbio data, simulated long jump reads, GAML output without long jumps, GAML output with long jumps, Celera output with long jumps