Materials

Here is a preliminary plan of lectures for this year (the topics and their order may change):

• 2024-02-22
  • ALL (BB): Introduction to the course · Contact, Introduction, Rules, Connecting to server, Editors, Command-line basics
  • ALL (BB): Introduction to Perl · Lecture, Homework
• 2024-02-29
  • ALL (BB): Command-line tools, Perl one-liners · Lecture, Homework
• 2024-03-07
  • ALL (TV): Job scheduling and make · Lecture, Homework
• 2024-03-14
  • ALL (TV): SQL (and Python) for beginners · Project, Lecture, Python, Homework
• 2024-03-21
  • INF/DAV (VB): Python, web crawling, HTML parsing, sqlite3 · Lecture, Homework, Screen
  • BIN (TV): Bioinformatics 1 (sequencing and genome assembly) · Lecture, Homework
• 2024-03-28 Easter
• 2024-04-04
  • INF/DAV (VB): Text data processing, flask · Lecture, Homework
  • BIN (TV): Bioinformatics 2 (gene finding, RNA-seq) · Lecture, Homework
• 2024-04-11
  • INF/DAV (BB): Data visualization in JavaScript · Lecture, Homework
  • BIN (TV): Bioinformatics 3 (genome variants) · Lecture, Homework
  • Project proposals due Friday April 12
• 2024-04-18 Student Research Conference
• 2024-04-25 No lecture
• 2024-05-02
  • ALL (BB): Python + C++ · Lecture, Homework
• 2024-05-09
  • ALL (VB): Cloud computing · Lecture, Homework
• 2024-05-16 No lecture

Optional materials:

• If you are interested in R language, you can look at these lectures and homeworks. Files for the tasks are available on the server. However do not submit these homeworks.
  • Lr1, HWr1 tutorial to R and basic plotting
  • Lr2, HWr2 statistical tests in R